Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq89515 556 4e-154 seq971 214 5e-51 >seq89515 Length=155578 Score = 556 bits (616), Expect = 4e-154 Identities = 713/983 (73%), Gaps = 0/983 (0%) Strand=Plus/Plus Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032 |||||||| || |||||||| || || ||||| ||||||||||||||||| || | || Sbjct 542 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 601 Query 36033 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 36092 |||||||||| || ||||||||||| | || | || | |||||| || || Sbjct 602 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACGGAT 661 Query 36093 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 36152 || ||||| || || || || || || |||||||||||| || || | ||| || | | Sbjct 662 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 721 Query 36153 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAG 36212 || || | || ||||||||||| |||||||| ||||| || || || || Sbjct 722 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTTGTTGAAA 781 Query 36213 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 36272 |||||||| |||||||| | || ||||| || |||||||| || || || ||||| || Sbjct 782 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTT 841 Query 36273 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 36332 ||||| ||||| |||||| | || || | || ||||||| | || ||||| | Sbjct 842 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 901 Query 36333 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 36392 || | ||||| || | || |||||||| ||||| | || |||||||| Sbjct 902 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCGCTGAATAGGGAGCCGCCGAATACA 961 Query 36393 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 36452 || || || || | ||| || || || ||||||||||| ||||| || ||||| || ||| Sbjct 962 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 1021 Query 36453 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 36512 | ||| || |||||||| || ||||| || ||||||||||||||||| ||||| ||||| Sbjct 1022 ATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 1081 Query 36513 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 36572 |||| ||||||| ||||| ||||| || ||||||||||| |||||||| || ||| Sbjct 1082 CCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 1141 Query 36573 CATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCT 36632 ||||| || | |||||| || | ||||||||||||| | || |||| |||| Sbjct 1142 GCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 1201 Query 36633 GAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCAC 36692 | | ||||| | ||||| | ||||| |||| ||| || || ||||| |||||||| Sbjct 1202 GCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCAT 1261 Query 36693 TCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGAT 36752 || || | || ||| ||||||||||||||||| ||||| | ||| || || || | Sbjct 1262 TCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTA 1321 Query 36753 GGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCA 36812 || | || || || ||||| || ||||||||||| |||| | ||| || ||||| ||| Sbjct 1322 GGAATAATGGCACCTGAGATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCA 1381 Query 36813 CGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACT 36872 ||||||||||| ||||| || ||||| ||||||| || ||||| | |||| | | | Sbjct 1382 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGAAGTT 1441 Query 36873 GCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTT 36932 || || || | | ||||||||| | || |||||||| || | || || ||||| | Sbjct 1442 GCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCG 1501 Query 36933 GTACTTGTAACCCAGTCACATAA 36955 || || || | ||||| ||| || Sbjct 1502 GTGCTGGTTATCCAGTTACAGAA 1524 >seq971 Length=113153 Score = 214 bits (236), Expect = 5e-51 Identities = 234/311 (75%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 36432 TTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATA 36491 || || || ||||| || |||| ||| || |||||||| || ||||| || ||||||||| Sbjct 72878 TTATGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATA 72937 Query 36492 CCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCA 36551 ||||||| ||||| ||||| |||| ||||||| ||||| ||||| | || |||||| Sbjct 72938 TCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGATAGCAGCTGCA 72997 Query 36552 ACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCC 36611 ||||| | |||||| || ||| ||||| || | |||||| || ||||||||| | Sbjct 72998 ACAGGAGTTGAATATGCAACAGTAATCCAAGGTCGCATACCCAGATGGAAACTAAGTTTC 73057 Query 36612 CATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATAT 36671 || | || |||| |||| | | ||||| | ||||| | ||||| |||| ||| Sbjct 73058 CACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAA 73117 Query 36672 GGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGA 36731 || || ||||| |||||||| || || | || ||| ||||||||||||||||| ||||| Sbjct 73118 GGACCACCGTTGTATAACCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAGTGC 73177 Query 36732 AGACCGATTGC 36742 | ||| || || Sbjct 73178 AAACCTATAGC 73188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150294468383310