Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq89515 569 6e-158 seq971 167 7e-37 seq3049 134 4e-27 seq10355 98.7 3e-16 seq559 87.8 5e-13 >seq89515 Length=155578 Score = 569 bits (630), Expect = 6e-158 Identities = 722/988 (73%), Gaps = 10/988 (1%) Strand=Plus/Plus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 ||||| || || |||||||| |||||||| ||||| ||||| ||||||||||||||||| Sbjct 542 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 601 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGC-TAGAGT--CAACGACT 5311 |||||||| | || ||| |||||||| || || || || | || | |||| || Sbjct 602 GCACGGTTAATGATATCAGCCCAAGTATTAA---TTACACGGCCTTGACTATCAACTACG 658 Query 5312 GACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 5371 || || ||||| || || || || || || |||||||||||| ||| || | || || Sbjct 659 GATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTG 718 Query 5372 AGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTA 5431 | ||| || | || || ||||||| ||| |||||||| ||||| ||| ||||| Sbjct 719 AACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTTGTTG 778 Query 5432 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC 5491 || |||||||| |||||||| | || ||||| || |||||||| || || || ||||| Sbjct 779 AAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAA 838 Query 5492 GTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCA 5551 |||||||||||||| |||||| | || || | || ||| | | || ||||| Sbjct 839 GTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCC 898 Query 5552 CGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAAT 5611 | || | |||||| || | ||||||||||| ||| | | || |||||| Sbjct 899 CTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCGCTGAATAGGGAGCCGCCGAAT 958 Query 5612 ACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAAT 5671 || ||||| || || | |||||| || || ||||||||||| ||||| || ||||||||| Sbjct 959 ACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT 1018 Query 5672 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCC 5731 || | ||| ||||| ||||||||||| || || ||||||||||||||| |||||||| Sbjct 1019 ACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCT 1078 Query 5732 TGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATATGCT 5791 || || | ||||| | || || || | | || || ||||| || ||||||||||| Sbjct 1079 TGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCA 1138 Query 5792 ACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAA 5851 || |||||| |||||||| || | | | ||||||||||||| | || |||| |||| Sbjct 1139 ACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAA 1198 Query 5852 GCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGC 5911 || | ||||| | |||||| | || | |||| || || || || ||||| | | Sbjct 1199 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAAC 1258 Query 5912 CATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGG 5969 |||||||| | ||| || ||||||||||| || || ||||| || || || || | Sbjct 1259 CATTCATCAACGGAT--GCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTGCAG 1316 Query 5970 AGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGG 6029 | | || | || ||| ||||| || || ||||||||||| ||||||||||| | || | Sbjct 1317 AAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAG 1376 Query 6030 GTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAG 6089 ||||||| || || || || || ||||| || ||||| | ||| || | |||||| ||| Sbjct 1377 GTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAG 1436 Query 6090 TAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGT 6149 ||||||||| || | | || ||||| || ||||||||||| || | || || |||| Sbjct 1437 AAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGT 1496 Query 6150 TGTTGGTGCTAGTAACCCAGTCACAGAA 6177 | | |||||| || | ||||| |||||| Sbjct 1497 TTTCGGTGCTGGTTATCCAGTTACAGAA 1524 >seq971 Length=113153 Score = 167 bits (184), Expect = 7e-37 Identities = 226/313 (72%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 5654 TTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATA 5713 || || || ||||||||||| | ||| ||||| ||||||||||| || || ||||||||| Sbjct 72878 TTATGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATA 72937 Query 5714 CCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCA 5773 ||||| |||||||| || || | ||||| | || || || | | || || ||| Sbjct 72938 TCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGATAGCAGCTGCA 72997 Query 5774 ACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCC 5833 || || | ||||||||| || |||||| |||||||| || | | ||||||||| | Sbjct 72998 ACAGGAGTTGAATATGCAACAGTAATCCAAGGTCGCATACCCAGATGGAAACTAAGTTTC 73057 Query 5834 CATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTAT 5893 || | || |||| |||| || | ||||| | |||||| | || | |||| || Sbjct 73058 CACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAA 73117 Query 5894 GGTCCTCCATTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGT 5951 || || || ||||| | ||||||||| | ||| || ||||||||||| || || |||| Sbjct 73118 GGACCACCGTTGTATAACCATTCATCAACGGAT--GCCGCTTCCCAGATTGGGTAAAAGT 73175 Query 5952 GTAACCCAATTGC 5964 | || || || || Sbjct 73176 GCAAACCTATAGC 73188 >seq3049 Length=46004 Score = 134 bits (148), Expect = 4e-27 Identities = 210/299 (70%), Gaps = 26/299 (9%) Strand=Plus/Plus Query 5217 GAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGGCACGGTTCAGGACATCTGCCC 5276 ||||||| ||||| || || ||||||||||||||||||||||| || | || ||| |||| Sbjct 5729 GAGCATTACGTTCCTGTATAACTTCCATACCAAGGTTGGCACGCTTAATGATATCAGCCC 5788 Query 5277 AAGTGGGAACGATTCTACCGC-TAGAGTCAACGACTGACTGATTGAAGTTAAAGCCGTTA 5335 |||| || || || || | || | | | ||| || ||||| Sbjct 5789 AAGTATTAA---TTACACGGCCTTGACT-ATCAACT-ACGGATTGG-------------- 5829 Query 5336 AGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAACGACGGGCCAA 5395 || |||||||||||| ||| || | || || | ||| || | || || |||||| Sbjct 5830 ---TTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACTTACTACAGGCCAA 5886 Query 5396 GTAGCC---AGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGATG 5452 |||| |||||||| ||||| | | ||||| || |||||||| |||||||| Sbjct 5887 TTAGCATCTAGGAAGAAGTGTAATGAAGGAGAGTTGTTGAAACTAGCATATTGGAAGATT 5946 Query 5453 AGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAA 5511 | | ||||| || |||||||| || ||||| ||||| |||||||||||||| ||||| Sbjct 5947 AATGGGCCAAAATACCCATGAGCGGCTACAATATTATAAGTTTCTTCCTCTTGACCGAA 6005 >seq10355 Length=40529 Score = 98.7 bits (108), Expect = 3e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638 ||||||||||| || | | || |||||||| ||||| || || | |||||| || Sbjct 16809 CCATGCATAGCGCTAAATAGGGAACCGCCGAATACACCAGCTACGCCTAACATGTGAAAT 16750 Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCA 5695 || ||||||||||| ||||| || ||||||||||| | ||| ||||| ||||||||| Sbjct 16749 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA 16693 >seq559 Length=144516 Score = 87.8 bits (96), Expect = 5e-13 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 ||||| || || |||||||| |||||||| | ||||||||| ||||||||||| |||||| Sbjct 93138 GCTAGGTCTAGAGGGAAGTTATGAGCATTACATTCGTGCATAACTTCCATACCGAGGTTG 93079 Query 5255 GCACGGTTCAGGACATCTGCCCAAGT 5280 ||||| || | || ||| ||| ||| Sbjct 93078 GCACGATTAATGATATCAACCCCAGT 93053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152487334906290