Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq89515 558 1e-154 seq971 205 3e-48 seq99 82.4 2e-11 >seq89515 Length=155578 Score = 558 bits (618), Expect = 1e-154 Identities = 716/987 (73%), Gaps = 0/987 (0%) Strand=Plus/Plus Query 25449 AGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 25508 ||| |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | Sbjct 538 AGAAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 597 Query 25509 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 25568 || |||||||||| || ||||||||||| | || | || | |||||| || Sbjct 598 GTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTAC 657 Query 25569 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 25628 || || ||||| || || || || || || |||||||||||| || || | ||| || Sbjct 658 GGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGT 717 Query 25629 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATT 25688 | ||| || | || ||||||||||| |||||||| ||||| ||| || || Sbjct 718 GAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTTGTT 777 Query 25689 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 25748 || |||||||| |||||||| | || ||||| || |||||||| || || || ||||| Sbjct 778 GAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 837 Query 25749 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 25808 || ||||| ||||| |||||| | || || | || ||||||| | || ||||| Sbjct 838 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 897 Query 25809 ACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 25868 | || | ||||| || | || |||||||| ||||| | || ||||| Sbjct 898 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCGCTGAATAGGGAGCCGCCGAA 957 Query 25869 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAA 25928 ||| || || || || | ||| || || || ||||||||||| ||||| || ||||| || Sbjct 958 TACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 1017 Query 25929 GACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCC 25988 |||| ||| || |||||||| || ||||| || ||||||||||||||||| ||||| || Sbjct 1018 TACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCC 1077 Query 25989 TTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGC 26048 ||| |||| ||||||| ||||| ||||| || ||||||||||| |||||||| || Sbjct 1078 TTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGC 1137 Query 26049 TACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA 26108 ||| ||||| || | ||| || || | ||||||||||||| | || |||| ||| Sbjct 1138 AACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTA 1197 Query 26109 AGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAA 26168 | | | || | | ||||| | ||||| |||| ||| || |||||||| || || Sbjct 1198 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAA 1257 Query 26169 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGA 26228 ||| || || | || ||| ||||||||||||||||| ||||| | ||| || || ||| Sbjct 1258 CCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTGCAGA 1317 Query 26229 TGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGG 26288 | || | || || |||||||| || ||||||||||| |||| | ||| || ||||| Sbjct 1318 AGTAGGAATAATGGCACCTGAGATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGG 1377 Query 26289 CTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGT 26348 |||||||||||||| ||||| || ||||| ||||||| || ||||| | |||| | | Sbjct 1378 TTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGA 1437 Query 26349 CACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTT 26408 ||| || || | | ||||||||| | || |||||||| || | || || ||||| Sbjct 1438 AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 1497 Query 26409 GTTTGTACTTGTAACCCAGTCACATAA 26435 | || || || | ||||| ||| || Sbjct 1498 TTCGGTGCTGGTTATCCAGTTACAGAA 1524 >seq971 Length=113153 Score = 205 bits (226), Expect = 3e-48 Identities = 250/341 (73%), Gaps = 0/341 (0%) Strand=Plus/Plus Query 25912 TTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATA 25971 || || || ||||| || |||| ||| || |||||||| || ||||| || ||||||||| Sbjct 72878 TTATGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATA 72937 Query 25972 CCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCA 26031 ||||||| ||||| ||||| |||| ||||||| ||||| ||||| | || |||||| Sbjct 72938 TCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGATAGCAGCTGCA 72997 Query 26032 ACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCC 26091 ||||| | |||||| || ||| ||||| || | ||| || || ||||||||| | Sbjct 72998 ACAGGAGTTGAATATGCAACAGTAATCCAAGGTCGCATACCCAGATGGAAACTAAGTTTC 73057 Query 26092 CATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATAT 26151 || | || |||| |||| | | || | | ||||| | ||||| |||| ||| Sbjct 73058 CACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAA 73117 Query 26152 GGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGA 26211 || |||||||| || ||||| || || | || ||| ||||||||||||||||| ||||| Sbjct 73118 GGACCACCGTTGTATAACCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAGTGC 73177 Query 26212 AGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGAT 26252 | ||| || || ||| | || | || || |||||||| Sbjct 73178 AAACCTATAGCTGCAGAAGTAGGAATAATGGCACCTGAGAT 73218 >seq99 Length=262956 Score = 82.4 bits (90), Expect = 2e-11 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 26245 CCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCT 26304 |||||||| || ||||||||||| |||| | ||| || ||||| |||||||||||||| Sbjct 206933 CCTGAGAT-ATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCA 206991 Query 26305 ATATCCACGGGAGGCGCAGC 26324 ||||| || ||||| ||||| Sbjct 206992 ATATCTACTGGAGGAGCAGC 207011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151832032228140