Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq3095 152 6e-32 seq341 134 2e-26 >seq3095 Length=123113 Score = 152 bits (168), Expect = 6e-32 Identities = 350/523 (67%), Gaps = 7/523 (1%) Strand=Plus/Minus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||||||||| |||||||| ||||||| || || || || ||||| |||||| Sbjct 111585 CAAGCAAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAAAAAGTTAAT 111526 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAAAGAA 37294 || |||||||| || | ||||| | ||||||||| || ||| ||| ||| || ||||| Sbjct 111525 CCAGGCATTAATCCACGCTTTTTTAGCCAAAATATCGC-GCAGAAGCTTCCCGAGAAGAA 111467 Query 37295 AATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAG- 37353 ||| ||||| || ||||| || | | || | |||| | | | | | | | Sbjct 111466 AATCCCTTCGACGCAAGCAAAGGCGAGTATGCGCTCAGCGAA----GGATTCTGAGCCGT 111411 Query 37354 AAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTT 37413 |||||| | ||| | ||||| |||||| || || || ||||| | Sbjct 111410 CAATCCAGCGGAGGGCCCACTTGGCCTTCTTCCCAACACAAGGAACGGTCTCGATTGCGT 111351 Query 37414 TTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACA 37473 || || || || || || ||| ||||||| | |||| || | ||| |||| Sbjct 111350 GGAAAAGCCGATTCTTCTCCTCCGAATCCTTTATATAGGACTCAAGAAGAAGACTGTACA 111291 Query 37474 TTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATA 37533 | || || || ||||| ||||| || ||||| || ||||||||| | || || || | Sbjct 111290 TCTCGGAATGGATATTCTCAATCGCGATCTGGAACCCATAAAAAGCACGCGCCTCCGAGA 111231 Query 37534 ATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTG 37593 |||||| || || | |||||| ||||| || || ||| || || || || | Sbjct 111230 TTTGAACCTCTTTCATGAACCTCCCAGCTAGATTCTCCAAAACAATGCCGTCGGAGGCGG 111171 Query 37594 CAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAAT 37653 |||| || |||||||||| || || ||||| | ||||| | | ||||| | ||| | Sbjct 111170 CAAAAAAGGCAAGAACATGCTTAATGAAATGCTTCTCATCCTCGGTCAATTTATCCCAGT 111111 Query 37654 CATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 | | ||| | || |||||||| || || | |||||||| Sbjct 111110 GCTGTACATCCTGGGACAAATCAACCTCTTCCGCCGTCCAAAA 111068 >seq341 Length=228855 Score = 134 bits (148), Expect = 2e-26 Identities = 348/526 (66%), Gaps = 7/526 (1%) Strand=Plus/Plus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 || || ||||||||||| ||||| || ||||||| | ||||| || || || || ||| Sbjct 2769 AAGCACGCAAAATCACAGTGTAAGCCCTCATCTCGAGAGATCAACTCGTTCGAGAAAGTT 2828 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAAA 37291 ||||| |||||||| |||| || || | |||||||||||| ||| ||| ||| || || Sbjct 2829 AATCCAGGCATTAATCCTCGCTTCTTTAGCCAAAATATTGC-GCAGAAGCTTCCCGAGAA 2887 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTAT-AAT 37350 |||||| |||||||| || || || | | ||| | | || | ||| | | Sbjct 2888 GAAAATCCCTTCAACGCAAGCGAAGGCGAGTATACGCTCAGCAAA----GGACTCTGAGC 2943 Query 37351 CAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTG 37410 || ||||| | ||| | ||||| | ||||| || || || |||| Sbjct 2944 CATCGATCCAGCGGAGGGCCCACTTGGCCTTCTTCTCCACACAAGGAACGGTCTCGATTG 3003 Query 37411 CTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTAT 37470 | | || || || || || || ||| | ||||||| |||| || | ||| | Sbjct 3004 CGTGGAAAAGCCTATTCTTCTCCTCCGAATCCTTGATATAAGATTCAAGAAGAAGACTGT 3063 Query 37471 ACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAG 37530 |||| ||||| || ||||| ||||| || || || || |||||||| | ||| || | Sbjct 3064 ACATCTCAGAATGGATATTCTCAATCGCGATTTGGAACCCATAAAACGCACGAGCCTCCG 3123 Query 37531 ATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAG 37590 | | |||||| || || | ||||| ||| | ||| || ||| || || || | Sbjct 3124 AGATTTGAACCTCCTTCATGAACCTTCCAGCGAGGTTCTCCAAAACGATGCCGTCTGAGG 3183 Query 37591 CTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCC 37650 | || || || ||||||| | || || ||||| | || || | | | ||||| || Sbjct 3184 CGGCGAAAAAGGCAAGAATGTGCTTAATGAAATGCTTCTCGTCCTCAGTCAGTTTTTCCC 3243 Query 37651 AATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 | | | ||||| | || ||||| || || || | |||||||| Sbjct 3244 AGTGCTGTATATCCTGGGACAAATCGACCTCTTCCGCCGTCCAAAA 3289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591654034520600