Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq89515 625 3e-174 seq971 183 3e-41 seq3049 150 2e-31 seq10355 138 1e-27 seq5532 96.9 4e-15 >seq89515 Length=155578 Score = 625 bits (692), Expect = 3e-174 Identities = 708/948 (75%), Gaps = 6/948 (1%) Strand=Plus/Minus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| |||||||||||| ||| | | ||| | || || || ||| Sbjct 1482 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATT 1423 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| || |||||||| ||||| |||||||| | ||||||||| | || || Sbjct 1422 GCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 1363 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 || || ||||| ||||| || ||||| ||||| | |||||| ||| ||||| ||| Sbjct 1362 CTACTTTATGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGT 1303 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | ||||| || || ||||||||||| ||| | ||||||| ||||| || || ||||| Sbjct 1302 TTGCACTTTTACCCAATCTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGT 1243 Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 162840 |||| |||| | || | |||||| | | || | | ||| |||||| || Sbjct 1242 CCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG 1183 Query 162841 TGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 162900 ||||||||| || ||| | |||||||| |||||||| ||||||||| || || || Sbjct 1182 TGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCT 1123 Query 162901 GTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 162960 || | || || |||||| |||||| |||| || | |||||||| ||| ||||| Sbjct 1122 GTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGAT 1063 Query 162961 GCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCAC 163020 | |||||||| || |||||||||||||| |||| |||| | || ||||| || |||||| Sbjct 1062 GGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCAC 1003 Query 163021 AACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTC 163080 |||||||| |||||||| || || ||| | || || || ||||||||||| || || || Sbjct 1002 AACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTA 943 Query 163081 TTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAA 163140 || || |||||||| ||||| | || |||||| | | ||||| ||||| || || | Sbjct 942 TTCAGCGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAAT 883 Query 163141 GAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCT 163200 || || || | ||||| | ||||| ||||| ||||| ||||| || || || || Sbjct 882 GAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCC 823 Query 163201 GCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCA 163260 |||||||| || ||||| || || |||||||| ||||| |||||||||||| ||||| Sbjct 822 GCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCG 763 Query 163261 CTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTG 163320 | ||||||||||| ||||| | ||||| || | |||||||||||||| | ||| | Sbjct 762 TTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATC 703 Query 163321 TCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCA 163377 |||||||| |||||||| || |||||||| |||||||||||||| ||||| | Sbjct 702 AGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAA 643 Query 163378 GGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAA 163437 || || || ||| ||||||||| |||||| ||||| | || |||||||||||| Sbjct 642 GGCCGT---GTAATTAATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAA 586 Query 163438 GTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 |||||||| || ||||||||||| |||||||| || ||||| ||| || Sbjct 585 GTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTTCT 538 >seq971 Length=113153 Score = 183 bits (202), Expect = 3e-41 Identities = 245/341 (72%), Gaps = 0/341 (0%) Strand=Plus/Minus Query 162682 ATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGG 162741 ||||| ||||| | |||||| ||| ||||| ||| | ||||| || || |||||| Sbjct 73218 ATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATCTGG 73159 Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTC 162801 ||||| ||| | ||||||| ||||| || || ||||| |||| |||| | || | Sbjct 73158 GAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTA 73099 Query 162802 CACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTA 162861 |||||| | | || | | ||| |||||| ||||| ||||| || || | Sbjct 73098 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGAAACTTAGTTTCCATCTG 73039 Query 162862 GGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTG 162921 |||||||| |||||||| ||||||||| || | || || | || || ||||||| Sbjct 73038 GGTATGCGACCTTGGATTACTGTTGCATATTCAACTCCTGTTGCAGCTGCTATCGCTGTT 72979 Query 162922 TTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCT 162981 |||||| |||| || | |||||||| ||| ||||| | |||||||| || |||||| Sbjct 72978 TTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGATATGCCTCTAGGAATTTCT 72919 Query 162982 GGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAA 163022 |||||||| |||| |||| | || ||||| || ||||| || Sbjct 72918 GGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAA 72878 >seq3049 Length=46004 Score = 150 bits (166), Expect = 2e-31 Identities = 213/301 (71%), Gaps = 30/301 (10%) Strand=Plus/Minus Query 163165 TTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTG 163224 ||||| ||||| ||||| ||||| || ||||| || |||||||| || ||||| | || Sbjct 6005 TTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGGTATTTTGGCCCATTA 5946 Query 163225 ATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGC--AT 163282 |||||||| ||||| |||||||||||| | |||| | ||||||||||| | ||| || Sbjct 5945 ATCTTCCAATATGCTAGTTTCAACAACTCTCCTTCATTACACTTCTTCCTAGATGCTAAT 5886 Query 163283 T-CCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTT 163341 | ||||| || | |||||||||||||| | ||| | |||||||| Sbjct 5885 TGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGC---------- 5836 Query 163342 AACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACT 163398 |||||||||||||| ||||| ||| || || ||| |||| Sbjct 5835 -----------TTTCAACCAATCCGTAGTTGATAGTCAAGGCCGT---GTAATTAATACT 5790 Query 163399 TGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCT 163458 ||||| |||||| |||| | || ||||||||||||||||| || || ||||||||| Sbjct 5789 TGGGCTGATATCATTAAGCGTGCCAACCTTGGTATGGAAGTTATACAGGAACGTAATGCT 5730 Query 163459 C 163459 | Sbjct 5729 C 5729 >seq10355 Length=40529 Score = 138 bits (152), Expect = 1e-27 Identities = 124/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 162981 TGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTT 163040 ||||||||| |||| |||| | || ||||| || |||||||||||||| |||||||| || Sbjct 16693 TGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 16752 Query 163041 CCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTC 163100 || ||| | || || || ||||||||||| ||||| || ||||| |||||||| ||||| Sbjct 16753 TCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGCGCTATGCATGGTTC 16812 Query 163101 TCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGA 163136 | || |||||| | | ||||| ||||| || || Sbjct 16813 CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGA 16848 >seq5532 Length=39607 Score = 96.9 bits (106), Expect = 4e-15 Identities = 117/158 (74%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 163324 ACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAGGTGGT 163383 |||||||| |||||||| || |||||||| ||||||||| | | | ||| ||| Sbjct 3275 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAAGATGATAGTCA---AGGCGGT 3219 Query 163384 AAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATG 163443 || ||| || |||||| |||||| |||| | || | |||||| | ||||||||| Sbjct 3218 ---GTAATTAATATTTGGGCTGATATCATTAATTGTGCCAGCCTTGGTTTAGAAGTTATG 3162 Query 163444 CACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGC 163481 || | ||||||||||| |||||||| | ||||| || Sbjct 3161 CATAAACGTAATGCTCATAACTTCCCTTTAGACCTAGC 3124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552465932676600