Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3095 123 5e-23 seq341 118 2e-21 >seq3095 Length=123113 Score = 123 bits (136), Expect = 5e-23 Identities = 377/577 (65%), Gaps = 13/577 (2%) Strand=Plus/Minus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 ||||||| ||| ||||| || | ||| || || || || || ||| | | |||| || Sbjct 111594 TAGAGCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAA 111535 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 || | |||||||| | || | || ||| ||||| || || || ||| || Sbjct 111534 AAAGTTAATCCAGGCATTAATCCACGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCC 111475 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 |||||||| || || || || || || ||| | | ||| |||| || ||| Sbjct 111474 GAGAAGAAAATCCCTTCGACGCAAGCAAAGGCGAGTATGCGCTCAGCGAAGGA----TTC 111419 Query 48302 TTGTCTGAGA-TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTC 48360 | | | | ||||| || ||||| | ||||||||| | || || | ||||| Sbjct 111418 TGAGCCGTCAATCCAGCGGAGGGCCCACTTGGCCTTCTTCCCAACACAAGGAACGGTCTC 111359 Query 48361 TATGGCCCGGAAGAGC---TTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAG 48417 || || |||| ||| ||||| ||| | | ||| | ||||| || || Sbjct 111358 GATTGCGTGGAAAAGCCGATTCTT---CTCCTCCGAATCCTTTATATAGGACTCAAGAAG 111302 Query 48418 CTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCT 48477 ||||||||| || || | |||||| || |||||||||||||| || || || | Sbjct 111301 AAGACTGTACATCTCGGAATGGATATTCTCAATCGCGATCTGGAACCCATAAAAAGCACG 111242 Query 48478 GGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCC 48536 ||||| | | || || ||| | ||| ||| ||||| |||||||| || || | Sbjct 111241 CGCCTCCGAGATTTGAACCTCTTTCATGAACCTC-CCAGCTAGATTCTCCAAAACAATGC 111183 Query 48537 CATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGA 48596 | || || || ||||| |||||||| ||||| |||| |||||| ||| | | ||| | Sbjct 111182 CGTCGGAGGCGGCAAAAAAGGCAAGAACATGCTTAATGAAATGCTTCTCATCCTCGGTCA 111123 Query 48597 GAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACG 48656 || |||| |||||| || | | || || || |||||| | ||||| || || | Sbjct 111122 ATTTATCCCAGTGCTGTACATCCTGGGACAAATCAACCTCTTCCGCCGTCCAAAACGAGG 111063 Query 48657 CGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 | ||| || |||||||| |||| || | ||||| Sbjct 111062 CCTCTGCCTTCTTGTACATTTCCCAAATTTGGGGATA 111026 >seq341 Length=228855 Score = 118 bits (130), Expect = 2e-21 Identities = 373/574 (65%), Gaps = 7/574 (1%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 ||||||| ||| ||||| || | ||| ||||| || || || ||| | | |||| ||| Sbjct 2763 TAGAGCAAGCACGCAAAATCACAGTGTAAGCCCTCATCTCGAGAGATCAACTCGTTCGAG 2822 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 || | |||||||| | || | || || ||||| || ||||| ||| || Sbjct 2823 AAAGTTAATCCAGGCATTAATCCTCGCTTCTTTAGCCAAAATATTGCGCAGAAGCTTCCC 2882 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 |||||||| || || || || ||||| ||| | | ||| | || || || Sbjct 2883 GAGAAGAAAATCCCTTCAACGCAAGCGAAGGCGAGTATACGCTCAGCAAAGGAC----TC 2938 Query 48302 TT-GTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTC 48360 | | | ||||||| || ||||| | |||||||||| | || || | ||||| Sbjct 2939 TGAGCCATCGATCCAGCGGAGGGCCCACTTGGCCTTCTTCTCCACACAAGGAACGGTCTC 2998 Query 48361 TATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTT 48420 || || |||| ||| | || ||| | | ||| | ||| | || || Sbjct 2999 GATTGCGTGGAAAAGCCTATTCTTCTCCTCCGAATCCTTGATATAAGATTCAAGAAGAAG 3058 Query 48421 TGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGC 48480 |||||||||||| || | |||||| || ||||| |||||||| || || || | || Sbjct 3059 ACTGTACATCTCAGAATGGATATTCTCAATCGCGATTTGGAACCCATAAAACGCACGAGC 3118 Query 48481 CTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCAT 48539 ||| | | || || || | ||| || |||||| || ||||| || || || | Sbjct 3119 CTCCGAGATTTGAACCTCCTTCATGAACCT-TCCAGCGAGGTTCTCCAAAACGATGCCGT 3177 Query 48540 CTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAG 48599 |||| || || || |||||||| | || |||| |||||| ||||| | || || Sbjct 3178 CTGAGGCGGCGAAAAAGGCAAGAATGTGCTTAATGAAATGCTTCTCGTCCTCAGTCAGTT 3237 Query 48600 CATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGA 48659 | |||| ||||| || | | || || || |||||| | ||||| || || || Sbjct 3238 TTTCCCAGTGCTGTATATCCTGGGACAAATCGACCTCTTCCGCCGTCCAAAACGAGGCCT 3297 Query 48660 GTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 |||||| |||||||| |||| || | ||||| Sbjct 3298 CTGCTTTCTTGTACATTTCCCAAATTTTGGGATA 3331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930490473017600