Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq10374 91.5 1e-13 seq1123 91.5 1e-13 seq979 86.0 5e-12 seq3688 84.2 2e-11 >seq10374 Length=62593 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || || || || || ||| || ||| || Sbjct 58774 ATGCAAATTTTTGTGAAGACCTTGACCGGCAAGACGATCACCTTGGAGGTGGAGAGCTCG 58833 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || ||||| ||||||| || || ||||| | || ||| ||| Sbjct 58834 GACACCATTGACAATGTCAAGGCAAAAATCCAGGATAAGGAGGGTATTCCACCAGACCAA 58893 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || || || | || ||| || |||| || || ||| Sbjct 58894 CAGAGGCTTATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGTACCTTGGCGGACTACAAC 58953 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || ||||| |||||||||||| |||| | || || | |||||||| Sbjct 58954 ATCCAGAAAGAGTCTACTCTGCACTTGGTGCTTAGGTTGAGGGGAGGGAT 59003 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || ||||| || || || ||| || ||| ||| Sbjct 58546 ATGCAAATTTTTGTGAAGACCTTGACGGGCAAGACAATCACCTTGGAGGTGGAGAGCTCA 58605 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || ||||| || ||| || || ||||| | || ||||| Sbjct 58606 GACACCATTGACAATGTCAAGGCCAAGATCCAAGATAAGGAGGGCATCCCACCTGATCAG 58665 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| |||||||| || || ||||| | || ||| ||| |||| || ||||| Sbjct 58666 CAGAGGCTTATCTTCGCTGGAAAACAGCTTGAGGATGGCCGCACTCTGGCGGACTATAAT 58725 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || ||||||||||| || ||| |||| | || | || ||||| || Sbjct 58726 ATCCAGAAAGAATCTACCCTTCACTTGGTTCTGAGGCTCCGTGGAGGTAT 58775 >seq1123 Length=183110 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || || |||||||||||| || || || Sbjct 67657 ATGCAAATCTTTGTCAAAACTCTTACTGGGAAAACCATTACCCTTGAGGTTGAGAGCTCT 67716 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | | || ||||| || ||| || || |||||| | ||| |||||| Sbjct 67717 GACACGATTGACAATGTCAAGGCCAAGATCCAAGATAAGGAGGGAATTCCCCCGGATCAA 67776 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||| | || ||||| ||||| || | |||||| | ||| | || ||||| ||| Sbjct 67777 CAGAGATTGATTTTTGCTGGCAAGCAGCTTGAAGATGGCAGAACCCTTGCAGATTACAAC 67836 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || || || || || |||| |||| |||| ||||| || Sbjct 67837 ATTCAGAAGGAGAGCACCCTTCATTTGGTGCTAAGGCTACGCGGAGGCAT 67886 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| |||| || || ||||| ||| || |||| ||| Sbjct 67429 ATGCAAATCTTCGTCAAAACCCTAACTGGAAAGACCATCACCCTAGAGGTGGAAAGTTCT 67488 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | || || ||| |||||||| ||| | || ||| ||| Sbjct 67489 GATACCATTGACAATGTAAAAGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAA 67548 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || || |||||||| || || ||| | |||||| | ||| | || ||||||||| Sbjct 67549 CAAAGGCTGATCTTTGCTGGAAAGCAACTCGAAGATGGTCGAACCCTTGCTGATTATAAC 67608 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || || || || || || || ||| |||| Sbjct 67609 ATACAGAAGGAGTCCACCCTCCACTTGGT 67637 >seq979 Length=283929 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || || || || || ||| || ||| ||| Sbjct 158566 ATGCAAATTTTTGTCAAGACCTTGACAGGCAAGACAATCACCTTGGAGGTGGAGAGCTCA 158625 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| ||| ||| ||||| ||||| | || ||| ||| Sbjct 158626 GACACTATTGATAATGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACCAA 158685 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| |||||||| || || || || | || ||| || |||| || || ||| Sbjct 158686 CAGAGGCTTATCTTCGCTGGGAAGCAGCTTGAGGATGGCCGTACCTTGGCGGACTACAAC 158745 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| ||||| |||||||||||| |||| | || || | ||||| || Sbjct 158746 ATTCAGAAAGAGTCTACTCTGCACTTGGTGCTTAGGTTGAGGGGAGGTAT 158795 >seq3688 Length=93992 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| |||| ||||| || ||||| ||| || ||| Sbjct 93554 ATGCAGATCTTTGTGAAAACCCTAACCGGTAAGACGATTACTCTCGAGGTTGAGAGTTCC 93613 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || ||| ||||| ||||| | || || || Sbjct 93614 GACACAATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCGCCGGACCAG 93673 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | ||||| || || || ||||| ||||| || || ||| | ||||| || ||| Sbjct 93674 CAGCGGCTTATTTTCGCAGGAAAACAGTTGGAGGACGGTAGAACCCTAGCCGACTACAAC 93733 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 |||||||| || |||||||||||| Sbjct 93734 ATTCAAAAGGAGTCTACTCTGCAC 93757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424940698651185