Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq89515 576 4e-160 seq971 199 1e-46 seq10355 87.8 5e-13 seq3049 80.6 8e-11 seq2156 80.6 8e-11 >seq89515 Length=155578 Score = 576 bits (638), Expect = 4e-160 Identities = 726/992 (73%), Gaps = 4/992 (0%) Strand=Plus/Plus Query 17828 GATTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCC 17887 ||| ||||||| ||||| |||||||||||||||||||| || ||||||||||| | || Sbjct 535 GATAGAAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACC 594 Query 17888 AAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTAC 17947 ||||||||| | ||| | | |||||||| ||| | || | ||| | | || Sbjct 595 AAGGTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAAC 654 Query 17948 AATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGA 18007 | |||||||||||| ||||| ||||| || || |||||||||||| ||| || | || Sbjct 655 TACGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGC 714 Query 18008 GGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTA-T 18066 || | ||| || | || ||||||||||| | |||||| |||| || | | | Sbjct 715 AGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTA-ACGAACGAGAGT 773 Query 18067 TGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATAT 18126 |||| || |||||||| |||||||| | || ||||| || |||||||| || || |||| Sbjct 774 TGTTGAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATAT 833 Query 18127 TATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCG 18186 |||| || ||||| ||||| || ||| | || || | || ||| ||| || || | Sbjct 834 TATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGG 893 Query 18187 TTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCAC 18246 |||| || || | ||||| || | || |||||||| ||||| | || | Sbjct 894 TTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCGCTGAATAGGGAGCCGC 953 Query 18247 CGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTT 18306 ||||||| || || || || | ||| || || || ||||||||||| ||||| || || | Sbjct 954 CGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCT 1013 Query 18307 GGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAAC 18366 ||||||| | |||||| ||||||||||| ||| || ||||||||||||||||| |||| Sbjct 1014 GGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAAC 1073 Query 18367 TCCCTTGTCCAAAAGGATA-AACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAA 18425 | ||||| |||| || || | | ||||| || | | |||||||| || || || ||| Sbjct 1074 TTCCTTGACCAATTGGGTAGATCAAGAAA-ACAGCGGTAGCAGCTGCAACAGGAGCTGAA 1132 Query 18426 TAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 18485 || |||||| |||||| || |||||||| || | ||||||||||||| | || ||| Sbjct 1133 TATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCC 1192 Query 18486 ATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTA 18545 |||||| || | || | | ||||| | ||||| |||| ||| || || ||||| Sbjct 1193 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTG 1252 Query 18546 TATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCG 18605 |||||||| || || | || ||| ||||||||||||||||| ||||| | ||| || || Sbjct 1253 TATAACCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCT 1312 Query 18606 TTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAG 18665 ||| | || | || || ||||| || || ||||||||||| |||| | ||| || Sbjct 1313 GCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCATAAAGTAGAGATCCAGAA 1372 Query 18666 ACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAAT 18725 ||||| |||||||||||||| || || || ||||||||||||| || ||||| | |||| Sbjct 1373 ACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAAT 1432 Query 18726 GCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGG 18785 | | || |||||| || | | ||||||||| | || |||||||| || | ||| || Sbjct 1433 ACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGA 1492 Query 18786 CGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 ||||| | || || || | ||||| ||| || Sbjct 1493 CGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 1524 >seq971 Length=113153 Score = 199 bits (220), Expect = 1e-46 Identities = 233/312 (75%), Gaps = 2/312 (1%) Strand=Plus/Plus Query 18294 TTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATA 18353 || || || || |||||||| | |||||| ||||||||||| ||| || ||||||||| Sbjct 72878 TTATGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATA 72937 Query 18354 CCATCAGAGAAACTCCCTTGTCCAAAAGGATA-AACGAGAAATACTGAGAAGGCAGCTGC 18412 ||||||| ||||| ||||| |||| || || | | ||||| || | || |||||||| Sbjct 72938 TCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAA-ACAGCGATAGCAGCTGC 72996 Query 18413 TACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTC 18472 || || | ||||| |||||| |||||| || |||||||| || ||||||||| Sbjct 72997 AACAGGAGTTGAATATGCAACAGTAATCCAAGGTCGCATACCCAGATGGAAACTAAGTTT 73056 Query 18473 CCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATA 18532 ||| | || ||||||||| || | || | | ||||| | ||||| |||| ||| Sbjct 73057 CCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATA 73116 Query 18533 TGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTG 18592 || || ||||| |||||||| || || | || ||| ||||||||||||||||| ||||| Sbjct 73117 AGGACCACCGTTGTATAACCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAGTG 73176 Query 18593 AAGACCGATTGC 18604 | ||| || || Sbjct 73177 CAAACCTATAGC 73188 >seq10355 Length=40529 Score = 87.8 bits (96), Expect = 5e-13 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 18278 || |||||||| |||| | || |||||||| || || || || | ||| || || Sbjct 16809 CCATGCATAGCGCTAAATAGGGAACCGCCGAATACACCAGCTACGCCTAACATGTGAAAT 16750 Query 18279 GGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACC 18334 || ||||||||||| ||||| || || |||||||| | |||||| ||||||||||| Sbjct 16749 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACC 16694 >seq3049 Length=46004 Score = 80.6 bits (88), Expect = 8e-11 Identities = 126/177 (71%), Gaps = 5/177 (3%) Strand=Plus/Plus Query 17979 TTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAGTGACGGGCCAA--- 18035 || |||||||||||| ||| || | || || | ||| || | || |||||| Sbjct 5830 TTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACTTACTACAGGCCAATTA 5889 Query 18036 GCAGCCAAGAAGAAATGTAGACTCCTGCTA-TTGTTAAAGCTAGCATACTGGAAGATGAG 18094 ||| | | |||||| |||| | | | ||||| || |||||||| |||||||| | Sbjct 5890 GCATCTAGGAAGAAGTGTA-ATGAAGGAGAGTTGTTGAAACTAGCATATTGGAAGATTAA 5948 Query 18095 TCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCAAA 18151 | ||||| || |||||||| || ||||||||||| || ||||| ||||| || || Sbjct 5949 TGGGCCAAAATACCCATGAGCGGCTACAATATTATAAGTTTCTTCCTCTTGACCGAA 6005 >seq2156 Length=183313 Score = 80.6 bits (88), Expect = 8e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 17829 ATTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCA 17888 || ||||||| ||||| ||||||||||||||||||| || ||||||||||| | ||| Sbjct 56910 ATAGAAGCTAGATCTAAAAGGAAGTTATGAGCATTACGTTCATGCATAACTTCCACACCA 56851 Query 17889 AGGTTAGCTCTGTT 17902 |||||||| | ||| Sbjct 56850 AGGTTAGCGCGGTT 56837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151157549959410