Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq89515 508 2e-139 seq971 174 5e-39 seq3049 111 5e-20 seq10355 86.0 2e-12 seq5532 80.6 8e-11 >seq89515 Length=155578 Score = 508 bits (562), Expect = 2e-139 Identities = 690/960 (72%), Gaps = 2/960 (0%) Strand=Plus/Plus Query 21468 GATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGG 21527 || || ||||| || |||||||| || || || || |||||||| || || | |||||| Sbjct 539 GAAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGG 598 Query 21528 TTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGA 21587 || |||||||||| || |||||||| || || || || | || | | | | | | Sbjct 599 TTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACG 658 Query 21588 GATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCA 21647 |||||||| || ||||||||||| | |||||||||||| || | || | |||| Sbjct 659 GATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTG 718 Query 21648 AACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTA 21707 ||||| |||||||| |||||||| ||||| || ||||| || | ||| || || || Sbjct 719 AACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTTGTTG 778 Query 21708 AAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAA 21767 || ||||||||||||||||| | || |||||||| || ||||| || || ||||| ||| Sbjct 779 AAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAA 838 Query 21768 GTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCA 21827 || |||||||||||||| || ||||||| | || || | | ||| || || || Sbjct 839 GTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCC 898 Query 21828 CGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAAT 21887 | || | || || |||| | ||| |||||||| ||| | || || ||| Sbjct 899 CTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCGCTGAATAGGGAGCCGCCGAAT 958 Query 21888 ACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAAC 21947 || || || || || | ||||||||| || |||||||| || ||||||||||||||||| Sbjct 959 ACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT 1018 Query 21948 ACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCC 22007 || | |||| ||||||| || || || || || | |||||| ||||||||||| || Sbjct 1019 ACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCT 1078 Query 22008 TGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCA 22067 || |||| || || | | ||| ||||| || ||||| || |||||||| || || ||| Sbjct 1079 TGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCA 1138 Query 22068 ACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAA 22127 ||| ||||| || | ||| || || || | |||||||||||||| || ||||||||| Sbjct 1139 ACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAA 1198 Query 22128 GCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGC 22187 | || |||| | |||||| | || | |||| | ||||| |||||||| | | Sbjct 1199 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAAC 1258 Query 22188 CATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTG 22247 |||||||||| | || |||||||| |||||||| ||||| | || || || | Sbjct 1259 CATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTGCAGAA 1318 Query 22248 CTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGT 22307 | |||| | ||| ||||| || || ||||| ||||| | || || |||| || ||| Sbjct 1319 GTAGGAATAATGGCACCTGAGATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGT 1378 Query 22308 TCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTT 22367 || || || ||||| || || || || || || ||| ||||| |||||||| || Sbjct 1379 TCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGAA 1438 Query 22368 GTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426 || |||| ||| ||| | || ||||| | || || |||||||| | ||||||||||| Sbjct 1439 GTTGCGGTCAATAAGGTA-GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 1497 >seq971 Length=113153 Score = 174 bits (192), Expect = 5e-39 Identities = 218/299 (73%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 21930 TTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATA 21989 || |||||||||||||| || | |||| ||||||| || || || || || | |||||| Sbjct 72878 TTATGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATA 72937 Query 21990 GCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCG 22049 ||||||||||| || || |||| || || | | ||| ||||| | ||||| || Sbjct 72938 TCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGATAGCAGCTGCA 72997 Query 22050 ACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCC 22109 ||||||| || || |||||| ||||| || | ||| || || | | ||||||| | Sbjct 72998 ACAGGAGTTGAATATGCAACAGTAATCCAAGGTCGCATACCCAGATGGAAACTAAGTTTC 73057 Query 22110 CACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAAT 22169 ||||| || ||||||||| | || |||| | |||||| | || | |||| | Sbjct 73058 CACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAA 73117 Query 22170 GGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTG 22228 ||||| |||||||| | ||||||||||| | || |||||||| |||||||| ||||| Sbjct 73118 GGACCACCGTTGTATAACCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAGTG 73176 >seq3049 Length=46004 Score = 111 bits (122), Expect = 5e-20 Identities = 131/177 (74%), Gaps = 3/177 (2%) Strand=Plus/Plus Query 21614 GTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCTACAACAGGCCAGGC 21673 |||||||||||| || | || | |||| ||||| |||| ||| |||||||| Sbjct 5829 GTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACTTACTACAGGCCAATT 5888 Query 21674 AGCA---AGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAGATAAG 21730 |||| || ||||| || | | | || || || || ||||||||||||||||| | Sbjct 5889 AGCATCTAGGAAGAAGTGTAATGAAGGAGAGTTGTTGAAACTAGCATATTGGAAGATTAA 5948 Query 21731 CCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAA 21787 | |||||||| || ||||| || |||||||| ||||| |||||||||||||| || Sbjct 5949 TGGGCCAAAATACCCATGAGCGGCTACAATATTATAAGTTTCTTCCTCTTGACCGAA 6005 >seq10355 Length=40529 Score = 86.0 bits (94), Expect = 2e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 21879 CCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCA 21938 || || ||||| || || || || | ||||||||| || |||||||| || ||||||||| Sbjct 16785 CCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 16726 Query 21939 GCCTGGAACACCAGCATGTAGTTGAAGGTGCC 21970 |||||||| || | |||| ||||||| || || Sbjct 16725 GCCTGGAATACAATCATGAAGTTGAAAGTACC 16694 >seq5532 Length=39607 Score = 80.6 bits (88), Expect = 8e-11 Identities = 115/161 (71%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 21468 GATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGG 21527 || || ||||| | |||||||| || || || || | |||||| || || || |||||| Sbjct 3121 GAGGCTAGGTCTAAAGGGAAGTTATGAGCATTACGTTTATGCATAACTTCTAAACCAAGG 3180 Query 21528 TTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGA 21587 |||||| |||| || |||||||| | || || || || | | ||| || Sbjct 3181 CTGGCACAATTAATGATATCAGCCCAAATATTAATTACACCGCCTTGA----CTATCATC 3236 Query 21588 GATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGT 21628 |||||| || ||||||||||| | |||||||||||| || Sbjct 3237 --TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGT 3275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146052582266700