Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq83971 102 1e-16 seq3095 102 1e-16 seq1271 93.3 5e-14 >seq83971 Length=1406 Score = 102 bits (112), Expect = 1e-16 Identities = 193/278 (69%), Gaps = 7/278 (3%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| || || ||||| | ||| | || | || ||||| | || |||||| Sbjct 857 CCTGGTACTGGGAAAACCCTTTTGGCCAGGGCAGTTGCCGGTGAGGCCGGGGTGCCATTC 798 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | ||| | ||| || | |||||||| |||| || |||||||| || ||| || Sbjct 797 TTTTCGTGTGCAGCCTCAGAGTTTGTGGAATTGTTCGTGGGTGTGGGAGCTTCAAGAGTG 738 Query 175435 CGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 | ||| | ||||||| ||| | ||| || || || ||||| |||||||||||||| Sbjct 737 AG-GATTTGTTTGAAAAGGCCAAGTCGAAAGCA-CCTTGCATTGTGTTCATTGATGAGAT 680 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAA 175551 |||||| ||||| | |||| | | || || | | | | | ||||| |||||||| Sbjct 679 TGATGCAGTGGGGAGGCAAAGAGGGGCGGGACTTGGAGG--TGGGAATGATGAGAGAGAG 622 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 || || |||||||| || | || || |||||||| || Sbjct 621 CAGACCATTAATCAGCTCTTGACTGAAATGGATGGGTT 584 >seq3095 Length=123113 Score = 102 bits (112), Expect = 1e-16 Identities = 342/524 (65%), Gaps = 19/524 (4%) Strand=Plus/Plus Query 64713 TTGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCCTGAATGA 64772 |||||| |||||||| |||||||||||| | ||| | | ||||| | | ||| || Sbjct 111070 TTGGACGGCGGAAGAGGTTGATTTGTCCCAGGATGTACAGCACTGGGATAAATTGACCGA 111129 Query 64773 AAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGT 64832 |||| ||| | ||||| ||| | | || || || ||||| | ||||| || ||||| Sbjct 111130 GGATGAGAAGCATTTCATTAAGCATGTTCTTGCCTTTTTTGCCGCCTCCGACGGCATTGT 111189 Query 64833 TTTTGAGAATATCAATAACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTCATT 64892 ||| |||||| | | | || | | || || || || || ||||| | || Sbjct 111190 TTTGGAGAATCTAGCTGGGAGGTTCATGAAAGAGGTTCAAATCTCGGAGGCGCGTGCTTT 111249 Query 64893 CTACGCATATCA-AT-GCCATAATGAAATGGTTCATGGCGAAACATATTCAAAATTGAT- 64949 || | | || || || || ||| | | ||| ||| | || || || | Sbjct 111250 TTATGGGTTCCAGATCGCGAT--TGAGAATATCCATTCCGAGATGTA--CAGTCTTCTTC 111305 Query 64950 -TGACAAATACATTAAGGAT--GGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAAC 65006 ||| || || |||||| ||| || ||||| | | | || | || ||| | || Sbjct 111306 TTGAGTCCTATATAAAGGATTCGGAG--GAGAAGAATCGGCTTTTCCACGCAATCGAGAC 111363 Query 65007 TGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCG 65066 || || ||| ||| ||||||||| || ||||| | ||| ||||| | ||| Sbjct 111364 CGTTCCTTGTGTTGGGAAGAAGGCCAAGTGGGCCCTCCGCTGGATTGAC-----GGCTCA 111418 Query 65067 C--TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGG 65124 |||||||| |||||| | | || ||||| || || || || || |||||||| || Sbjct 111419 GAATCCTTCGCTGAGCGCATACTCGCCTTTGCTTGCGTCGAAGGGATTTTCTTCTCGGGA 111478 Query 65125 TCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCA 65184 |||||||| || | |||| | || ||||| || | ||||| || || || ||| Sbjct 111479 AGCTTCTGCGCGATATTTTGGCTAAAAAAGCGTGGATTAATGCCTGGATTAACTTTTTCA 111538 Query 65185 AATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || || | || || |||||||||||| | ||| || ||||| Sbjct 111539 AACGAGTTAATCTCGCGAGATGAGGGTTTACACTGTGATTTTGC 111582 >seq1271 Length=174858 Score = 93.3 bits (102), Expect = 5e-14 Identities = 228/340 (67%), Gaps = 17/340 (5%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| ||||||| | || ||| || || || || ||| | ||| ||||| Sbjct 168072 CCAGGTACTGGAAAGATGTTGCTAGCCAAGGCAATTGCTGGGGAAGCTGGTGTTCCATTT 168013 Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || || | || | | | ||||| ||||||||||||||||| |||||| | | || Sbjct 168012 TTCTCAATA-TCAGGTTCGGAGTTTGTTGAGATGTTTGTTGGTGTTGGTGCCTCACGAGT 167954 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 || ||||| || | | ||| || ||| || || ||||| || | ||||| || Sbjct 167953 CCGTGATCTTTTCAAGAAGGCCAAGGAGAATGCTCCCTGCATTGTATTTGTCGATGAAAT 167894 Query 175494 TGATGC-GGTGGGC------AAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGA 175546 |||||| | ||||| || |||| | ||||||| | |||||| || | Sbjct 167893 TGATGCTGTTGGGCGTCAAAGAGGAACG-GGAATTGGTGGT------GGAAATGATGAAA 167841 Query 175547 GAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCA 175606 | ||||| || | || || || | || || |||||||| ||||| | ||||| | Sbjct 167840 GGGAACAGACTCTGAACCAGCT-TTGACGGAAATGGATGGTTTTGAAGGGAACACTGGTA 167782 Query 175607 TTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || | || |||||||| ||||| || | ||||| ||||| Sbjct 167781 TTATTGTAATTGCGGCAACTAACCGTGCTGATATTCTTGA 167742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595902075903200