Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq89515 542 3e-149 seq971 168 8e-37 seq3049 102 1e-16 >seq89515 Length=155578 Score = 542 bits (600), Expect = 3e-149 Identities = 709/979 (72%), Gaps = 2/979 (0%) Strand=Plus/Plus Query 7887 AGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAA 7946 ||| |||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | Sbjct 538 AGAAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 597 Query 7947 GTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAAC 8006 ||| || | ||| | | ||| |||| ||| ||| | || | | |||||| || Sbjct 598 GTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTAC 657 Query 8007 TGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGT 8066 |||||||| || || || || || ||||| || ||||| |||| ||||| | || ||| Sbjct 658 GGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGT 717 Query 8067 TAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT 8126 ||||| | || ||| || || | | ||| ||||||||||| | | | |||||| Sbjct 718 GAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTTGTT 777 Query 8127 -AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTAT 8185 |||| | ||||| ||||||||||||| ||||| || |||||||| || || ||||||| Sbjct 778 GAAACTA-GCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATTAT 836 Query 8186 AGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCT 8245 | || ||||| |||||||| || | ||||| | || ||| || | ||| || || | Sbjct 837 AAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 896 Query 8246 CTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGA 8305 | ||||| | | ||| || || || ||||| |||||||| ||||| || || || |||| Sbjct 897 CCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCGCTGAATAGGGAGCCGCCGA 956 Query 8306 ACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGA 8365 | | ||| ||||| ||| ||| || || || |||||||| ||||| ||||| || |||| Sbjct 957 ATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 1016 Query 8366 ATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAAC 8425 |||| | ||||||||| || ||||||||||| ||||||||||| |||||||| || | Sbjct 1017 ATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTC 1076 Query 8426 CCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATG 8485 | ||||||| ||| || | ||||| || ||| |||||| | || ||||| ||||| Sbjct 1077 CTTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATG 1136 Query 8486 CTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGT 8545 | ||| ||||| |||| |||||| | ||| | | ||||||| | |||||||| Sbjct 1137 CAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGT 1196 Query 8546 AAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACA 8605 || || | |||| | |||||| | | || | | ||| ||||| ||||| || | Sbjct 1197 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATA 1256 Query 8606 ACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGG 8665 |||| ||||| | | || |||||||| || || || ||||| || || ||||| | Sbjct 1257 ACCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTGCAG 1316 Query 8666 AAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAG 8725 ||| |||| | ||||| ||||| || ||||||||||| | | || || | ||||| Sbjct 1317 AAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAG 1376 Query 8726 GTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAG 8785 ||||||||||||| || ||||| || || ||||||||||| || || | ||||| || Sbjct 1377 GTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAG 1436 Query 8786 TAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGT 8845 || || | || ||| ||| ||||| | ||| |||||||| || | ||||| | || Sbjct 1437 AAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGT 1496 Query 8846 TGTTTGTACTTGTAACCCA 8864 | | || || || | ||| Sbjct 1497 TTTCGGTGCTGGTTATCCA 1515 >seq971 Length=113153 Score = 168 bits (186), Expect = 8e-37 Identities = 242/341 (71%), Gaps = 0/341 (0%) Strand=Plus/Plus Query 8350 TTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATT 8409 |||||||| || |||||||| | ||||||||| || ||||||||||| ||||||||||| Sbjct 72878 TTATGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATA 72937 Query 8410 CCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGAT 8469 ||||||| || || ||||||| ||| || | ||||| || |||| |||||| | Sbjct 72938 TCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGATAGCAGCTGCA 72997 Query 8470 ACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCC 8529 || |||| |||||| ||| ||||| |||| |||||| | || | | | | Sbjct 72998 ACAGGAGTTGAATATGCAACAGTAATCCAAGGTCGCATACCCAGATGGAAACTAAGTTTC 73057 Query 8530 CACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATAT 8589 |||| | |||||||||| || | |||| | |||||| | | || | | ||| Sbjct 73058 CACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAA 73117 Query 8590 GGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGT 8649 ||||| ||||| || ||||| ||||| | | || |||||||| || || || ||||| Sbjct 73118 GGACCACCGTTGTATAACCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAGTGC 73177 Query 8650 AATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGAT 8690 || || ||||| |||| |||| | ||||| ||||| Sbjct 73178 AAACCTATAGCTGCAGAAGTAGGAATAATGGCACCTGAGAT 73218 >seq3049 Length=46004 Score = 102 bits (112), Expect = 1e-16 Identities = 132/179 (74%), Gaps = 5/179 (3%) Strand=Plus/Plus Query 8033 GGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAACACATACAACTGGGAATG 8092 |||| || ||||| |||| ||||| | || ||| ||||| | || ||| || || | Sbjct 5828 GGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACTTACTACAGGCCAAT 5887 Query 8093 TAGCG---AGGAAGAAGTGAAGACTTCTACTGTTGTT-AAACGATGCATACTGGAAGATT 8148 |||| ||||||||||| | | |||||| |||| | ||||| ||||||||| Sbjct 5888 TAGCATCTAGGAAGAAGTGTAATGAAGGAGAGTTGTTGAAACTA-GCATATTGGAAGATT 5946 Query 8149 AATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAA 8207 ||| ||||| || |||||||| || ||||||||||| || ||||| |||||||| || Sbjct 5947 AATGGGCCAAAATACCCATGAGCGGCTACAATATTATAAGTTTCTTCCTCTTGACCGAA 6005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615173288465800