Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq89515 508 2e-139 seq971 174 5e-39 seq3049 111 5e-20 seq10355 86.0 2e-12 seq5532 80.6 8e-11 >seq89515 Length=155578 Score = 508 bits (562), Expect = 2e-139 Identities = 690/960 (72%), Gaps = 2/960 (0%) Strand=Plus/Minus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | |||||||| || || | ||||| || | ||| ||| |||| || Sbjct 1497 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 1439 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379 || |||||||| ||||| ||| || || || || || || ||||| || || || Sbjct 1438 TTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1379 Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439 ||| || |||| || || | ||||| ||||| || || ||||| ||| | |||| | Sbjct 1378 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCAGGTGCCATTATTCCTAC 1319 Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499 | || || || | ||||| |||||||| |||||||| || | |||||||||| Sbjct 1318 TTCTGCAGCTATAGGTTTGCACTTTTACCCAATCTGGGAAGCGGCATCCGTTGATGAATG 1259 Query 41500 GCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGC 41559 | | |||||||| ||||| | |||| | || | |||||| | |||| || | Sbjct 1258 GTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 1199 Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619 ||||||||| || |||||||||||||| | || || || ||| | || ||||| ||| Sbjct 1198 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGT 1139 Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACA 41679 ||| || || |||||||| || ||||| || ||||| ||| | | || || |||| || Sbjct 1138 TGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATTGGTCA 1079 Query 41680 GGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGT 41739 || ||||||||||| |||||| | || || || || || ||||||| |||| | || Sbjct 1078 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 1019 Query 41740 GTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGT 41799 ||||||||||||||||| || |||||||| || ||||||||| | || || || || || Sbjct 1018 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGT 959 Query 41800 ATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCG 41859 ||| || || | ||| |||||||| ||| | |||| || || | || | Sbjct 958 ATTCGGCGGCTCCCTATTCAGCGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAG 899 Query 41860 TGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGAC 41919 || || || ||| | | || || | ||||||| || |||||||||||||| || Sbjct 898 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 839 Query 41920 TTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTT 41979 ||| ||||| || || ||||| || |||||||| || | ||||||||||||||||| || Sbjct 838 TTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTT 779 Query 41980 TAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTT 42039 || || || ||| | || ||||| || ||||| |||||||| |||||||| ||||| Sbjct 778 CAACAACTCTCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTT 719 Query 42040 TGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATC 42099 |||| | || | || |||||||||||| | ||||||||||| || |||||||| Sbjct 718 CACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 659 Query 42100 TCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAA 42159 | | | | | | || | || || || || |||||||| || |||||||||| || Sbjct 658 CGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAA 599 Query 42160 CCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGCATC 42219 |||||| | || || |||||||| || || || || |||||||| || ||||| || || Sbjct 598 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTTC 539 >seq971 Length=113153 Score = 174 bits (192), Expect = 5e-39 Identities = 218/299 (73%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 41459 CACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCA 41518 ||||| |||||||| |||||||| || | ||||||||||| | |||||||| ||||| Sbjct 73176 CACTTTTACCCAATCTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCT 73117 Query 41519 TTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGG 41578 | |||| | || | |||||| | |||| || | ||||||||| || |||||| Sbjct 73116 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 73057 Query 41579 GAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTC 41638 ||||||| | | || || ||| | || ||||| |||||| || || ||||||| Sbjct 73056 AAACTTAGTTTCCATCTGGGTATGCGACCTTGGATTACTGTTGCATATTCAACTCCTGTT 72997 Query 41639 GCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCT 41698 || ||||| | ||||| ||| | | || || |||| || || ||||||||||| | Sbjct 72996 GCAGCTGCTATCGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGAT 72937 Query 41699 ATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAA 41757 ||||| | || || || || || ||||||| |||| | || |||||||||||||| || Sbjct 72936 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAA 72878 >seq3049 Length=46004 Score = 111 bits (122), Expect = 5e-20 Identities = 131/177 (74%), Gaps = 3/177 (2%) Strand=Plus/Minus Query 41900 TTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTT 41959 || |||||||||||||| ||||| |||||||| || ||||| || |||||||| | | Sbjct 6005 TTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGGTATTTTGGCCCATTA 5946 Query 41960 ATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCT---TGCTGCC 42016 ||||||||||||||||| || || || || | | | || ||||| || |||| Sbjct 5945 ATCTTCCAATATGCTAGTTTCAACAACTCTCCTTCATTACACTTCTTCCTAGATGCTAAT 5886 Query 42017 TGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAAC 42073 |||||||| ||| |||| ||||| |||| | || | || |||||||||||| Sbjct 5885 TGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAAC 5829 >seq10355 Length=40529 Score = 86.0 bits (94), Expect = 2e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 41717 GGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTT 41776 || || ||||||| |||| | || ||||||||||||||||| || |||||||| || ||| Sbjct 16694 GGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 16753 Query 41777 CACATGCTGGGTGTGGCCGGCGTATTTGGTGG 41808 |||||| | || || || || ||||| || || Sbjct 16754 CACATGTTAGGCGTAGCTGGTGTATTCGGCGG 16785 >seq5532 Length=39607 Score = 80.6 bits (88), Expect = 8e-11 Identities = 115/161 (71%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 42059 ACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGA 42118 || |||||||||||| | ||||||||||| || |||||| || ||| | | || Sbjct 3275 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA--GATGATAG----TCAAGGC 3222 Query 42119 CAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATG 42178 || || || | |||||||| || |||| |||||| |||||| || || || ||| Sbjct 3221 GGTGTAATTAATATTTGGGCTGATATCATTAATTGTGCCAGCCTTGGTTTAGAAGTTATG 3162 Query 42179 CATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGCATC 42219 ||| | || || || || |||||||| | ||||| || || Sbjct 3161 CATAAACGTAATGCTCATAACTTCCCTTTAGACCTAGCCTC 3121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146058975463560