Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq89515 565 7e-157 seq971 149 2e-31 seq3049 127 6e-25 seq99 91.5 4e-14 seq10355 89.7 1e-13 seq5532 86.0 2e-12 >seq89515 Length=155578 Score = 565 bits (626), Expect = 7e-157 Identities = 729/998 (73%), Gaps = 6/998 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || || | ||||||||||| |||| |||||| Sbjct 1533 TGGGGTCGCTTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTT 1474 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| ||||||| |||| || | | | || || | ||| |||||| | || |||| Sbjct 1473 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCCTTCA 1416 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 ||||||| ||||| ||||| |||||||| |||||||||||||| ||||| ||||| || | Sbjct 1415 TTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTT 1356 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 |||| ||||| || ||||| |||||| | | |||| | || || || | || | Sbjct 1355 ATGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACT 1296 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | || | ||||||||||| || |||| |||||| | ||||| || || |||||| Sbjct 1295 TTTACCCAATCTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATG 1236 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637 | || | || | |||||| | | ||| | | |||| |||| || || ||||||| Sbjct 1235 AACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAAC 1176 Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTG 42697 || | ||| || || ||| | || ||||| |||||| || || || ||||| || | Sbjct 1175 TTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 1116 Query 42698 CAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGC 42757 | || || || || ||| | |||| ||| |||| ||||| |||||| ||||| |||| Sbjct 1115 CTGCTACCGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGC 1056 Query 42758 CTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTC 42817 |||| || ||||| ||||| |||||||||||| | || ||||||||||| || ||||| | Sbjct 1055 CTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCC 996 Query 42818 TTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAG 42877 ||||||| || || || ||| | || || || || ||||| || || || | ||| | Sbjct 995 TTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGCG 936 Query 42878 CTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCC 42937 ||||||||||| | || || ||| | | | | ||||| || ||||| ||| Sbjct 935 CTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTG 876 Query 42938 AAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATG 42997 ||| | || |||| |||||||||||||| || |||||||| || || || || |||| Sbjct 875 CTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATG 816 Query 42998 GTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCAC 43056 |||| ||||| || | |||||||||||||| | |||| || || ||| || || ||| Sbjct 815 GTTATTTTGGCCGATTAATCTTCCAATATGC-TAGTTTCAACAACTCTCGTTCGTTACAC 757 Query 43057 TTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACT 43116 ||||| || || |||||||| || || || || ||||||||| || | || |||| ||| Sbjct 756 TTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACT 697 Query 43117 ATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCAT 43176 ||||| || ||| | |||||||| || || |||||||| | ||||||| ||| | | Sbjct 696 ATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGCCGT 637 Query 43177 GTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCAC 43236 || || ||||||||||||||| | || ||||| |||||||| | || || ||||| Sbjct 636 GTAATTAATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCAT 577 Query 43237 GAGCGGAATGCACATAACTTCCCGCTTGATCTTGCATC 43274 || || ||||| ||||||||||| || || || || || Sbjct 576 GAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTTC 539 >seq971 Length=113153 Score = 149 bits (164), Expect = 2e-31 Identities = 205/287 (71%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 42526 ATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTC 42585 ||||||||||| || |||| |||||| | ||||| || || |||||| | || | Sbjct 73164 ATCTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATT 73105 Query 42586 GTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACTTTCGTAC 42645 || | |||||| | | ||| | | |||| |||| || || ||| ||||| | | Sbjct 73104 GTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGAAACTTAGTTTC 73045 Query 42646 CGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACT 42705 | || || ||| | || ||||| |||||| || || | ||||| || || || | Sbjct 73044 CATCTGGGTATGCGACCTTGGATTACTGTTGCATATTCAACTCCTGTTGCAGCTGCTATC 72985 Query 42706 GCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGC 42765 || || ||| | |||| ||| |||| ||||| |||||| |||| |||||||| || Sbjct 72984 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGATATGCCTCTAGGA 72925 Query 42766 ATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAA 42812 ||||| ||||| |||||||||||| | || ||||||||||| ||||| Sbjct 72924 ATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAA 72878 >seq3049 Length=46004 Score = 127 bits (140), Expect = 6e-25 Identities = 205/297 (69%), Gaps = 26/297 (9%) Strand=Plus/Minus Query 42955 TTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTT 43014 |||||||||||||| || |||||||| ||||| || || ||||| || ||||| | | Sbjct 6005 TTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGGTATTTTGGCCCATTA 5946 Query 43015 ATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCT---TGCCGC 43070 |||||||||||||| | |||| || || || || || |||||||| || ||| Sbjct 5945 ATCTTCCAATATGC-TAGTTTCAACAACTCTCCTTCATTACACTTCTTCCTAGATGCTAA 5887 Query 43071 TTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTT 43130 |||||| || || | || ||||||||| || | || |||| |||||||| Sbjct 5886 TTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGC--------- 5836 Query 43131 GAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTG 43190 || |||||||| | ||||||| ||| | ||| || |||||| Sbjct 5835 ------------TTTCAACCAATCCGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTG 5788 Query 43191 GGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGC 43247 ||||||||| | || |||||||||||||| | || || || || || || ||||| Sbjct 5787 GGCTGATATCATTAAGCGTGCCAACCTTGGTATGGAAGTTATACAGGAACGTAATGC 5731 >seq99 Length=262956 Score = 91.5 bits (100), Expect = 4e-14 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 42400 GCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTAT 42459 ||||| ||||| ||||| |||||||| |||||||||||||| ||||| ||||| || ||| Sbjct 207011 GCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTAT 206952 Query 42460 GGCAACAACATCATCTCTGGTG 42481 || ||||| || ||||| |||| Sbjct 206951 GGAAACAATAT-ATCTCAGGTG 206931 >seq10355 Length=40529 Score = 89.7 bits (98), Expect = 1e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 42772 GGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTC 42831 ||||| |||||||||||| | || ||||||||||| || ||||| |||||||| || || Sbjct 16694 GGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 16753 Query 42832 CATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGT 42888 || ||| | || || || || ||||| || || || | || |||||||||||| Sbjct 16754 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGCGCTATGCATGGT 16810 >seq5532 Length=39607 Score = 86.0 bits (94), Expect = 2e-12 Identities = 108/149 (72%), Gaps = 6/149 (4%) Strand=Plus/Minus Query 43111 AGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAG 43170 || |||||||| || ||| | |||||||| || || |||||| | ||||| ||| Sbjct 3278 AGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA------GATGATAGTCAA 3225 Query 43171 AATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTG 43230 ||| || || |||||||||||| | ||| |||||| |||||| || || || Sbjct 3224 GGCGGTGTAATTAATATTTGGGCTGATATCATTAATTGTGCCAGCCTTGGTTTAGAAGTT 3165 Query 43231 ATGCACGAGCGGAATGCACATAACTTCCC 43259 ||||| | || ||||| ||||||||||| Sbjct 3164 ATGCATAAACGTAATGCTCATAACTTCCC 3136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143380225979220