Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq89515 491 1e-134 seq971 150 5e-32 seq3049 104 7e-18 seq10355 84.2 6e-12 >seq89515 Length=155578 Score = 491 bits (544), Expect = 1e-134 Identities = 705/988 (71%), Gaps = 4/988 (0%) Strand=Plus/Plus Query 25874 GATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGG 25933 || |||| ||| || || ||||||||||||||||| || ||||||||||| | || ||| Sbjct 539 GAAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGG 598 Query 25934 TTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACT 25993 ||||| ||||| | | ||||||||| ||| |||| || | | ||| ||||| Sbjct 599 TTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACG 658 Query 25994 GACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTC 26053 || ||||| || || |||||||||||||| || ||||| |||| |||||| | || || Sbjct 659 GATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTG 718 Query 26054 AGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTA 26113 | ||| || || || || ||||||| ||| || ||||| || | ||||| ||| || Sbjct 719 AACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTTGTTG 778 Query 26114 AAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATAT 26173 ||||| ||||| || || ||||||| ||||| || || || || || || |||||||| Sbjct 779 AAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAA 838 Query 26174 GTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCT 26233 || ||||| ||||| || || | || || | ||| || | | ||||| ||||| Sbjct 839 GTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCC 898 Query 26234 GCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAA 26293 || | ||||| ||||| || |||||||| ||| || | || ||||| Sbjct 899 CTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCGCTGAATAGGGAGCCGCCGAAT 958 Query 26294 ACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAAT 26353 || ||||| || || ||| || ||||||||||| || || || || || || |||||| Sbjct 959 ACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT 1018 Query 26354 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCT 26413 || | ||| ||||| ||||||||||| || || |||||||| |||||| |||||| ||| Sbjct 1019 ACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCT 1078 Query 26414 TGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCA 26473 || || | || || | ||||| || ||| ||| || | | || |||| ||||||| Sbjct 1079 TGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCA 1138 Query 26474 ACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT 26533 ||| ||||| |||| ||| || || | | || |||||||||| | || || Sbjct 1139 ACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAA 1198 Query 26534 GCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGC 26593 ||||| || | ||||||||| | | ||| |||| ||| || || || ||||||| | Sbjct 1199 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAAC 1258 Query 26594 CACTCGTCCA-GTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGA 26652 || || || | | |||| ||||||||||| |||||||| || | || || || ||| Sbjct 1259 CATTCATCAACGGATGCC-GCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTGCAGA 1317 Query 26653 GGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGG 26712 | || | | || ||||| || ||||||||||| || | || || || ||||| || Sbjct 1318 AGTAGGAATAATGGCACCTGAGATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGG 1377 Query 26713 CTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATG 26771 ||||| || ||||| |||||||| || || || || |||||||||| ||||| ||| | Sbjct 1378 TTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACA-G 1436 Query 26772 TAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGT 26831 ||| || | | |||| || ||||| | || || |||||||| | || ||||||| Sbjct 1437 AAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGT 1496 Query 26832 TCTCAGTACTTGTAACCCACTCACAAAA 26859 | || || || || | ||| | ||| || Sbjct 1497 TTTCGGTGCTGGTTATCCAGTTACAGAA 1524 >seq971 Length=113153 Score = 150 bits (166), Expect = 5e-32 Identities = 215/300 (72%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 26336 TTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATT 26395 ||||| || || |||||||| | ||| ||||| ||||||||||| || || |||||||| Sbjct 72878 TTATGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATA 72937 Query 26396 CCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGAT 26455 ||||| |||||| ||||| || | || || | ||||| || |||| ||| || | Sbjct 72938 TCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGATAGCAGCTGCA 72997 Query 26456 AGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCC 26515 | || | || |||||||||| ||||| |||| ||| || || | || |||| | Sbjct 72998 ACAGGAGTTGAATATGCAACAGTAATCCAAGGTCGCATACCCAGATGGAAACTAAGTTTC 73057 Query 26516 CACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATAT 26575 |||| | || || ||||| || | ||||||||| | | ||| |||| ||| Sbjct 73058 CACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAA 73117 Query 26576 GGTCCGCCATTGTATAGCCACTCGTCCA-GTGTGCCAGCTTCCCAGATCGGGTAAAAATG 26634 || || || ||||||| ||| || || | | |||| ||||||||||| |||||||| || Sbjct 73118 GGACCACCGTTGTATAACCATTCATCAACGGATGCC-GCTTCCCAGATTGGGTAAAAGTG 73176 >seq3049 Length=46004 Score = 104 bits (114), Expect = 7e-18 Identities = 199/298 (67%), Gaps = 24/298 (8%) Strand=Plus/Plus Query 25899 GAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCGGTTTAATACATCAGCCC 25958 |||||||||| || || |||||||| | || ||||| || || || | | |||||||| Sbjct 5729 GAGCATTACGTTCCTGTATAACTTCCATACCAAGGTTGGCACGCTTAATGATATCAGCCC 5788 Query 25959 ATGTAGGTATTATCTTTCCATTAACATCTACTACTGACTGGTTAAAGTTAAAACCATTTA 26018 | ||| |||| || | | ||| ||||| || ||||| || Sbjct 5789 AAGTATTAATTACACGGCCTTGACTATCAACTACGGATTGGTTGAAA------------- 5835 Query 26019 GGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACAACCGGCCAAG 26078 ||||| |||| |||||| | || || | ||| || | || || |||||| Sbjct 5836 --------GCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACTTACTACAGGCCAAT 5887 Query 26079 TAGCA---AGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATTA 26135 ||||| || ||||| || | ||| | ||| || ||||| ||||| || || |||| Sbjct 5888 TAGCATCTAGGAAGAAGTGTAATGAAGGAGAGTTGTTGAAACTAGCATATTGGAAGATTA 5947 Query 26136 ATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAA 26193 || ||||| ||||| || || || ||||||||||| || ||||| ||||| || || Sbjct 5948 ATGGGCCAAAATACCCATGAGCGGCTACAATATTATAAGTTTCTTCCTCTTGACCGAA 6005 >seq10355 Length=40529 Score = 84.2 bits (92), Expect = 6e-12 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 26246 GAAGTAACCAAACTTCCGTGCATAGCAGCGAAA-AGAGCTCCACCGAAAACCCCAGCAAC 26304 ||||| ||||| || |||||||| || ||| || | || ||||| || ||||| || Sbjct 16824 GAAGTTACCAAGGAACCATGCATAGC-GCTAAATAGGGAACCGCCGAATACACCAGCTAC 16766 Query 26305 ACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAA 26364 || ||| || ||||||||||| || || || || || || |||||||| | ||| || Sbjct 16765 GCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAA 16706 Query 26365 GTTAAAAGTACCA 26377 ||| ||||||||| Sbjct 16705 GTTGAAAGTACCA 16693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147554983528800