Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq89515 571 7e-158 seq971 168 8e-37 seq10355 111 2e-19 seq3049 98.7 1e-15 seq99 82.4 9e-11 >seq89515 Length=155578 Score = 571 bits (632), Expect = 7e-158 Identities = 707/966 (73%), Gaps = 6/966 (1%) Strand=Plus/Minus Query 154993 GACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCT 155052 || ||||| | || | || ||||| |||||| | ||||||||| | | | | || Sbjct 1500 GAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCA 1441 Query 155053 GCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGT 155112 || | || ||| | |||||||||||||| ||||| ||||| ||||||||||||||| Sbjct 1440 ACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGT 1381 Query 155113 GAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCT 155172 ||||| || |||| ||| || | ||||| ||||| || ||||| ||||| || | ||| Sbjct 1380 GAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCAGGTGCCATTATTCCT 1321 Query 155173 AGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAG 155232 | ||| || || ||| | ||||| || || || |||||||| ||| | ||||||| Sbjct 1320 ACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATCTGGGAAGCGGCATCCGTTGATGAA 1261 Query 155233 TGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACA 155292 ||||| ||||| |||||||||| |||| | || | |||||| | | || | | Sbjct 1260 TGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 1201 Query 155293 GCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGT 155352 ||| |||||| ||||||||||| || |||||| || ||||| |||||||| | Sbjct 1200 TGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCT 1141 Query 155353 GTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGT 155412 |||||||| || || || || | ||||| |||||| ||| | | || || | ||| Sbjct 1140 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATTGGT 1081 Query 155413 CAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTC 155472 ||||| ||| ||||||| |||||||| || || ||||||||||| |||| ||| | Sbjct 1080 CAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 1021 Query 155473 GTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGT 155532 || ||||| || || ||||| |||||||||||||| || |||||| | || ||||| ||| Sbjct 1020 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGT 961 Query 155533 GTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATC 155592 || ||||| || || || ||| |||||||| ||||| ||||| || ||| | ||| Sbjct 960 GTATTCGGCGGCTCCCTATTCAGCGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATC 901 Query 155593 CGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAA 155652 | ||||| || || | || ||| || | ||||||| ||||| ||||| |||||| Sbjct 900 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAA 841 Query 155653 ACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCC 155712 |||||||| || || || |||||||| || || || || | |||||||| ||||| Sbjct 840 ACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGT 781 Query 155713 TTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGG 155772 ||||||||||| | | ||||||||||| ||||| |||||||| || | |||||| Sbjct 780 TTCAACAACTCTCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGG 721 Query 155773 GCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAG 155832 |||||| | ||| | || ||||| |||||||| || |||||||| |||||||| Sbjct 720 TTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 661 Query 155833 TCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGC 155889 || ||||| || |||| || || || ||| ||||| || || ||||||| Sbjct 660 TCCGTAGTTGA---TAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGT 604 Query 155890 GCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTT 155949 ||| |||||||||||||| ||||| || ||||| ||||| ||||||||||| ||||| Sbjct 603 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTA 544 Query 155950 GCTGCT 155955 ||| || Sbjct 543 GCTTCT 538 >seq971 Length=113153 Score = 168 bits (186), Expect = 8e-37 Identities = 242/341 (71%), Gaps = 0/341 (0%) Strand=Plus/Minus Query 155152 ATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGG 155211 ||||| ||||| || | |||| ||| || || ||| | ||||| || || || ||| Sbjct 73218 ATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATCTGG 73159 Query 155212 GAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTC 155271 ||||| ||| | ||||||| ||||| ||||| |||||||||| |||| | || | Sbjct 73158 GAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTA 73099 Query 155272 CACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTT 155331 |||||| | | || | | ||| |||||| ||||| ||||| || || ||| Sbjct 73098 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGAAACTTAGTTTCCATCTG 73039 Query 155332 GGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTA 155391 || ||||| |||||||| ||||||||| || | || || | ||||| ||||||| Sbjct 73038 GGTATGCGACCTTGGATTACTGTTGCATATTCAACTCCTGTTGCAGCTGCTATCGCTGTT 72979 Query 155392 TTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCT 155451 ||| | | || || | |||||||| ||| ||||||| |||||||| || || ||| Sbjct 72978 TTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGATATGCCTCTAGGAATTTCT 72919 Query 155452 GGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAA 155492 |||||||| |||| ||| | || ||||| || || || || Sbjct 72918 GGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAA 72878 >seq10355 Length=40529 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155451 TGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTT 155510 ||||||||| |||| ||| | || ||||| || || ||||| |||||||||||||| || Sbjct 16693 TGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 16752 Query 155511 CCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTC 155570 |||||| | || ||||| ||||| ||||| || || || || |||||||| ||||| Sbjct 16753 TCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGCGCTATGCATGGTTC 16812 Query 155571 ATTGGTGACATCTTCACTAATCCGTGAAACTACTGA 155606 ||||| || ||| | ||| | ||||| || || Sbjct 16813 CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGA 16848 >seq3049 Length=46004 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/178 (72%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 155635 TTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTT 155694 ||||| ||||| |||||||||||||| ||||| || |||||||| || || || | | Sbjct 6005 TTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGGTATTTTGGCCCATTA 5946 Query 155695 ATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCT---TGCTGCA 155751 |||||||| ||||| ||||||||||| | ||||||||||| |||| Sbjct 5945 ATCTTCCAATATGCTAGTTTCAACAACTCTCCTTCATTACACTTCTTCCTAGATGCTAAT 5886 Query 155752 TGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACC 155809 |||||||| || | |||||| |||||| | ||| | || ||||| ||||||| Sbjct 5885 TGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACC 5828 >seq99 Length=262956 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 155080 GCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTAT 155139 ||||| ||||| ||||| |||||||||||||||||||| || |||| ||| || | ||| Sbjct 207011 GCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTAT 206952 Query 155140 GGTAACAACATCATCTCTGGTG 155161 || ||||| || ||||| |||| Sbjct 206951 GGAAACAATAT-ATCTCAGGTG 206931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584180805963400