Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq89515 517 3e-142 seq971 165 2e-36 seq10355 91.5 4e-14 >seq89515 Length=155578 Score = 517 bits (572), Expect = 3e-142 Identities = 711/989 (72%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 |||||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 538 AGAAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 597 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | ||||| | ||||||||||||| ||| || || | | || ||||| Sbjct 598 GTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTAC 657 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 || ||||| || || |||||||| ||||| ||||||||||| ||||| | | || Sbjct 658 GGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGT 717 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTT 40768 | ||| || || | || || ||||| | || |||||||||| || ||| ||||| Sbjct 718 GAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTTGTT 777 Query 40769 GAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATA 40828 ||| ||||||||| || |||| || ||||| ||||| || || |||||||| ||||| Sbjct 778 GAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 837 Query 40829 AGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTC 40888 ||| || | || ||||| || | || || | || |||||| |||| ||||| || Sbjct 838 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 897 Query 40889 CCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAA 40948 || || | ||||| || | | || |||||||| || | | || || || Sbjct 898 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCGCTGAATAGGGAGCCGCCGAA 957 Query 40949 GACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAA 41008 || || || ||||| | ||| || ||||||||||| || |||||||| || || ||||| Sbjct 958 TACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 1017 Query 41009 GACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACC 41068 |||| |||||||||||| || ||| ||||||| ||||||||||||||| ||| || Sbjct 1018 TACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCC 1077 Query 41069 CTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGC 41128 ||||| | ||| || | ||||| ||||| ||| |||| | ||||||| ||||| Sbjct 1078 TTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGC 1137 Query 41129 CACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTA 41188 ||| ||||| |||| |||||| || | | | ||||||||||| | ||| ||| Sbjct 1138 AACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTA 1197 Query 41189 TGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAG 41248 ||||| || | ||| ||||| | ||||| |||| ||| || || |||||||||| Sbjct 1198 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAA 1257 Query 41249 CCACTCGTCCA-GTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAG 41307 ||| || || | | |||| ||||||||||||||||| || || | || || || || Sbjct 1258 CCATTCATCAACGGATGCC-GCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTGCAG 1316 Query 41308 AGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGG 41367 | | |||| | || || || ||||||||||| || || | || || || ||||| | Sbjct 1317 AAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAG 1376 Query 41368 GCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACAT 41426 | ||||| || ||||| |||||||| || || || || || ||||| || || || ||| Sbjct 1377 GTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACA- 1435 Query 41427 GTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGG 41486 | || || || | ||| | || ||||| | ||||||||||| || | ||| || ||| Sbjct 1436 GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGG 1495 Query 41487 TTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 || |||||||| || | ||||||||| || Sbjct 1496 TTTTCGGTGCTGGTTATCCAGTTACAGAA 1524 >seq971 Length=113153 Score = 165 bits (182), Expect = 2e-36 Identities = 218/300 (73%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 40992 TTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATA 41051 || || || || ||||| |||| |||||||||||| || ||| ||||||| ||||||| Sbjct 72878 TTATGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATA 72937 Query 41052 CCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGAC 41111 ||||||| ||| || ||||| | ||| || | ||||| ||||| | ||| |||| Sbjct 72938 TCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGATAGCAGCTGCA 72997 Query 41112 AATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCC 41171 | |||| || ||||| ||| ||||| |||| |||||| || | | ||||| | Sbjct 72998 ACAGGAGTTGAATATGCAACAGTAATCCAAGGTCGCATACCCAGATGGAAACTAAGTTTC 73057 Query 41172 CACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATAT 41231 |||| | ||| ||| ||||| || | ||| ||||| | ||||| |||| ||| Sbjct 73058 CACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAA 73117 Query 41232 GGTCCGCCGTTGTATAGCCACTCGTCCA-GTGTGCCGGCTTCCCAGATTGGGTAGAAATG 41290 || || |||||||||| ||| || || | | |||| ||||||||||||||||| || || Sbjct 73118 GGACCACCGTTGTATAACCATTCATCAACGGATGCC-GCTTCCCAGATTGGGTAAAAGTG 73176 >seq10355 Length=40529 Score = 91.5 bits (100), Expect = 4e-14 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 40876 TTTCCGTGGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACA 40935 |||| ||||| |||| || | ||||| || | | || |||||||| ||| | Sbjct 16850 TTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCGCTAAATA 16791 Query 40936 AAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGT 40995 | ||| || || || || || ||||| | ||| || ||||||||||| || ||||||| Sbjct 16790 GGGAACCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGT 16731 Query 40996 GTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCA 41033 | || || ||||| |||| |||||||||||| || ||| Sbjct 16730 GCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA 16693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143549645696010