Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq89515 601 4e-167 seq971 183 3e-41 seq10355 150 2e-31 seq3049 111 2e-19 seq5532 87.8 2e-12 >seq89515 Length=155578 Score = 601 bits (666), Expect = 4e-167 Identities = 704/950 (74%), Gaps = 6/950 (1%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 || ||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 538 AGAAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 597 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||||| ||| || ||||||||| ||| || || ||| ||||| Sbjct 598 GTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTAC---ACGGCCTTGACTATCAAC 654 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 |||||||||||||| |||||||| || |||||||| |||||||| | ||| | || Sbjct 655 TACGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGC 714 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 |||||||||||| | || ||||| | ||||| ||||||||||| | | ||||| Sbjct 715 AGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTT 774 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||||||| ||||| |||||||| || || || || || |||||||| || || || || Sbjct 775 GTTGAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATT 834 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714 ||||| ||||| ||||| ||||| ||||||| | || || || | || || || Sbjct 835 ATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGT 894 Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774 ||| ||||| | | |||||| || | ||||| |||||||| || || || || || || Sbjct 895 TTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCGCTGAATAGGGAGCCGCC 954 Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834 ||||||||| ||||| || | ||| || |||||||||||||||||||||||||| || || Sbjct 955 GAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 1014 Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894 ||| || | |||| |||| |||||||||||||| || |||||||| | ||||| ||| Sbjct 1015 GAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACT 1074 Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954 |||||||| | || |||| |||||| |||||| || || | || ||||| || || Sbjct 1075 TCCTTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATA 1134 Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACA 68014 ||| ||| |||||||| |||||||| |||||| || ||||||||||| |||||| Sbjct 1135 TGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 1194 Query 68015 GTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATA 68074 ||| | | || | | |||||| | || | |||| |||| ||||| || || Sbjct 1195 GTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTA 1254 Query 68075 CAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTT 68134 ||||| ||||| | | ||| ||||||||||| || || ||||| | ||| || || Sbjct 1255 TAACCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTGC 1314 Query 68135 TGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAAC 68194 ||| |||||| || ||||| || || || ||||| || || | || || || | ||| Sbjct 1315 AGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCATAAAGTAGAGATCCAGAAAC 1374 Query 68195 AGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCA 68254 |||||| | |||||||| ||||| |||||||| || |||||||| ||||| || || Sbjct 1375 AGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATAC 1434 Query 68255 AGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAA 68304 || | ||| | | ||| ||| |||||||| ||||| ||||| |||| Sbjct 1435 AGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAA 1484 >seq971 Length=113153 Score = 183 bits (202), Expect = 3e-41 Identities = 245/341 (72%), Gaps = 0/341 (0%) Strand=Plus/Plus Query 67821 TTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATT 67880 || ||||| || ||||| || | |||| |||| |||||||||||||| || |||||||| Sbjct 72878 TTATGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATA 72937 Query 67881 GCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGAC 67940 | ||||| ||| |||||||| | || |||| |||||| ||||||| || || | Sbjct 72938 TCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGATAGCAGCTGCA 72997 Query 67941 ACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCC 68000 || |||| || ||||| ||| |||||||| |||||||| ||| || || ||||| | Sbjct 72998 ACAGGAGTTGAATATGCAACAGTAATCCAAGGTCGCATACCCAGATGGAAACTAAGTTTC 73057 Query 68001 CACTGACGACCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAA 68060 |||| |||||| ||| | | || | | |||||| | || | |||| || Sbjct 73058 CACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAA 73117 Query 68061 GGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGA 68120 || ||||| || || ||||| ||||| | | ||| ||||||||||| || || ||||| Sbjct 73118 GGACCACCGTTGTATAACCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAGTGC 73177 Query 68121 AGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAAT 68161 | ||| || || ||| |||||| || ||||| || || Sbjct 73178 AAACCTATAGCTGCAGAAGTAGGAATAATGGCACCTGAGAT 73218 >seq10355 Length=40529 Score = 150 bits (166), Expect = 2e-31 Identities = 127/156 (81%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 67707 TCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGT 67766 || || ||||| ||||| | | |||||| || | ||||| |||||||| ||||| || Sbjct 16848 TCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCGCTAAATAGG 16789 Query 67767 GAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGC 67826 ||||| ||||||||||| ||||| || | ||| || |||||||||||||||||||||||| Sbjct 16788 GAACCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGC 16729 Query 67827 TCTGCTTGGAACACGAACATGTAGTTAAAAGTACCA 67862 || || ||||| || | |||| |||| ||||||||| Sbjct 16728 TCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA 16693 >seq3049 Length=46004 Score = 111 bits (122), Expect = 2e-19 Identities = 204/301 (68%), Gaps = 30/301 (10%) Strand=Plus/Plus Query 67384 GAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCC 67443 |||| ||||| || || ||||||||||| ||||| || | |||| ||| || |||| Sbjct 5729 GAGCATTACGTTCCTGTATAACTTCCATACCAAGGTTGGCACGCTTAATGATATCAGCCC 5788 Query 67444 AAGTAGGAATCACTTTACCACCTGCG---TCAACGACGGATTGGTTGAAGTTGAAACCGT 67500 ||||| ||| || || ||| ||||| |||||||||||||| Sbjct 5789 AAGTATTAATTAC---ACGGCCTTGACTATCAACTACGGATTGGTTGAAA---------- 5835 Query 67501 TGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAGACCACAGGG- 67559 |||||||| | ||| | |||||||||||||| | || ||||| Sbjct 5836 -----------GCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACTTACTACAGGCC 5884 Query 67560 AAT--GCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATACTGGAAGA 67617 ||| ||| | ||||||||||| | |||||||||||| ||||| ||||||| Sbjct 5885 AATTAGCATCTAGGAAGAAGTGTAATGAAGGAGAGTTGTTGAAACTAGCATATTGGAAGA 5944 Query 67618 TCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGA 67677 | || | || || || |||||||| || ||||| || ||||| ||||| ||||| |||| Sbjct 5945 TTAATGGGCCAAAATACCCATGAGCGGCTACAATATTATAAGTTTCTTCCTCTTGACCGA 6004 Query 67678 A 67678 | Sbjct 6005 A 6005 >seq5532 Length=39607 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/158 (73%), Gaps = 6/158 (4%) Strand=Plus/Plus Query 67362 GCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCT 67421 || ||||| | ||||||||| ||||| ||||| | ||||||||||| | ||||| | Sbjct 3124 GCTAGGTCTAAAGGGAAGTTATGAGCATTACGTTTATGCATAACTTCTAAACCAAGGCTG 3183 Query 67422 GCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCAACGACGGAT 67481 || | |||| ||| || |||||| || ||| || ||| ||| | | | | Sbjct 3184 GCACAATTAATGATATCAGCCCAAATATTAATTAC---ACCGCCT---TGACTATCATCT 3237 Query 67482 TGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGT 67519 |||||||| |||||||| || |||||||| |||||||| Sbjct 3238 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGT 3275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566312821517400