Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20]
89,515 sequences; 867,455,155 total letters
Query= NC_021071.1
Length=177211
Score E
Sequences producing significant alignments: (Bits) Value
seq89515 601 4e-167
seq971 183 3e-41
seq10355 150 2e-31
seq3049 111 2e-19
seq5532 87.8 2e-12
>seq89515
Length=155578
Score = 601 bits (666), Expect = 4e-167
Identities = 704/950 (74%), Gaps = 6/950 (1%)
Strand=Plus/Plus
Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417
|| ||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| |||||
Sbjct 538 AGAAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 597
Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474
|| | ||||| ||| || ||||||||| ||| || || ||| |||||
Sbjct 598 GTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTAC---ACGGCCTTGACTATCAAC 654
Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534
|||||||||||||| |||||||| || |||||||| |||||||| | ||| | ||
Sbjct 655 TACGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGC 714
Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594
|||||||||||| | || ||||| | ||||| ||||||||||| | | |||||
Sbjct 715 AGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACGAGAGTT 774
Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654
||||||| ||||| |||||||| || || || || || |||||||| || || || ||
Sbjct 775 GTTGAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCTACGATATT 834
Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714
||||| ||||| ||||| ||||| ||||||| | || || || | || || ||
Sbjct 835 ATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGT 894
Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774
||| ||||| | | |||||| || | ||||| |||||||| || || || || || ||
Sbjct 895 TTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCGCTGAATAGGGAGCCGCC 954
Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834
||||||||| ||||| || | ||| || |||||||||||||||||||||||||| || ||
Sbjct 955 GAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 1014
Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894
||| || | |||| |||| |||||||||||||| || |||||||| | ||||| |||
Sbjct 1015 GAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACT 1074
Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954
|||||||| | || |||| |||||| |||||| || || | || ||||| || ||
Sbjct 1075 TCCTTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATA 1134
Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACA 68014
||| ||| |||||||| |||||||| |||||| || ||||||||||| ||||||
Sbjct 1135 TGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 1194
Query 68015 GTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATA 68074
||| | | || | | |||||| | || | |||| |||| ||||| || ||
Sbjct 1195 GTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTA 1254
Query 68075 CAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTT 68134
||||| ||||| | | ||| ||||||||||| || || ||||| | ||| || ||
Sbjct 1255 TAACCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTGC 1314
Query 68135 TGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAAC 68194
||| |||||| || ||||| || || || ||||| || || | || || || | |||
Sbjct 1315 AGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCATAAAGTAGAGATCCAGAAAC 1374
Query 68195 AGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCA 68254
|||||| | |||||||| ||||| |||||||| || |||||||| ||||| || ||
Sbjct 1375 AGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATAC 1434
Query 68255 AGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAA 68304
|| | ||| | | ||| ||| |||||||| ||||| ||||| ||||
Sbjct 1435 AGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAA 1484
>seq971
Length=113153
Score = 183 bits (202), Expect = 3e-41
Identities = 245/341 (72%), Gaps = 0/341 (0%)
Strand=Plus/Plus
Query 67821 TTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATT 67880
|| ||||| || ||||| || | |||| |||| |||||||||||||| || ||||||||
Sbjct 72878 TTATGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATA 72937
Query 67881 GCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGAC 67940
| ||||| ||| |||||||| | || |||| |||||| ||||||| || || |
Sbjct 72938 TCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGATAGCAGCTGCA 72997
Query 67941 ACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCC 68000
|| |||| || ||||| ||| |||||||| |||||||| ||| || || ||||| |
Sbjct 72998 ACAGGAGTTGAATATGCAACAGTAATCCAAGGTCGCATACCCAGATGGAAACTAAGTTTC 73057
Query 68001 CACTGACGACCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAA 68060
|||| |||||| ||| | | || | | |||||| | || | |||| ||
Sbjct 73058 CACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAA 73117
Query 68061 GGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGA 68120
|| ||||| || || ||||| ||||| | | ||| ||||||||||| || || |||||
Sbjct 73118 GGACCACCGTTGTATAACCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAGTGC 73177
Query 68121 AGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAAT 68161
| ||| || || ||| |||||| || ||||| || ||
Sbjct 73178 AAACCTATAGCTGCAGAAGTAGGAATAATGGCACCTGAGAT 73218
>seq10355
Length=40529
Score = 150 bits (166), Expect = 2e-31
Identities = 127/156 (81%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 67707 TCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGT 67766
|| || ||||| ||||| | | |||||| || | ||||| |||||||| ||||| ||
Sbjct 16848 TCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCGCTAAATAGG 16789
Query 67767 GAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGC 67826
||||| ||||||||||| ||||| || | ||| || ||||||||||||||||||||||||
Sbjct 16788 GAACCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGC 16729
Query 67827 TCTGCTTGGAACACGAACATGTAGTTAAAAGTACCA 67862
|| || ||||| || | |||| |||| |||||||||
Sbjct 16728 TCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA 16693
>seq3049
Length=46004
Score = 111 bits (122), Expect = 2e-19
Identities = 204/301 (68%), Gaps = 30/301 (10%)
Strand=Plus/Plus
Query 67384 GAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCC 67443
|||| ||||| || || ||||||||||| ||||| || | |||| ||| || ||||
Sbjct 5729 GAGCATTACGTTCCTGTATAACTTCCATACCAAGGTTGGCACGCTTAATGATATCAGCCC 5788
Query 67444 AAGTAGGAATCACTTTACCACCTGCG---TCAACGACGGATTGGTTGAAGTTGAAACCGT 67500
||||| ||| || || ||| ||||| ||||||||||||||
Sbjct 5789 AAGTATTAATTAC---ACGGCCTTGACTATCAACTACGGATTGGTTGAAA---------- 5835
Query 67501 TGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAGACCACAGGG- 67559
|||||||| | ||| | |||||||||||||| | || |||||
Sbjct 5836 -----------GCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACTTACTACAGGCC 5884
Query 67560 AAT--GCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATACTGGAAGA 67617
||| ||| | ||||||||||| | |||||||||||| ||||| |||||||
Sbjct 5885 AATTAGCATCTAGGAAGAAGTGTAATGAAGGAGAGTTGTTGAAACTAGCATATTGGAAGA 5944
Query 67618 TCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGA 67677
| || | || || || |||||||| || ||||| || ||||| ||||| ||||| ||||
Sbjct 5945 TTAATGGGCCAAAATACCCATGAGCGGCTACAATATTATAAGTTTCTTCCTCTTGACCGA 6004
Query 67678 A 67678
|
Sbjct 6005 A 6005
>seq5532
Length=39607
Score = 87.8 bits (96), Expect = 2e-12
Identities = 115/158 (73%), Gaps = 6/158 (4%)
Strand=Plus/Plus
Query 67362 GCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCT 67421
|| ||||| | ||||||||| ||||| ||||| | ||||||||||| | ||||| |
Sbjct 3124 GCTAGGTCTAAAGGGAAGTTATGAGCATTACGTTTATGCATAACTTCTAAACCAAGGCTG 3183
Query 67422 GCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCAACGACGGAT 67481
|| | |||| ||| || |||||| || ||| || ||| ||| | | | |
Sbjct 3184 GCACAATTAATGATATCAGCCCAAATATTAATTAC---ACCGCCT---TGACTATCATCT 3237
Query 67482 TGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGT 67519
|||||||| |||||||| || |||||||| ||||||||
Sbjct 3238 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGT 3275
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 566312821517400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |