Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq203 113 8e-20 seq7954 111 3e-19 seq1123 107 3e-18 seq4972 100 5e-16 seq4136 93.3 8e-14 seq2414 86.0 1e-11 >seq203 Length=254899 Score = 113 bits (124), Expect = 8e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || |||||||||| | | || || || | || | ||| || || || Sbjct 79945 AATTTGCATGCCACCTCTCAGCCTCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTT 80004 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || | | || || ||| || | |||||| || ||||| || | || ||||| Sbjct 80005 ATAATCCGCAAGGGTCCTTCCATCTTCAAGTTGTTTGCCTGCAAATATAAGCCTTTGTTG 80064 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| |||||||| |||||||| ||||| | || | ||| ||| || || || Sbjct 80065 GTCCGGAGGGATTCCTTCCTTATCTTGAATTTTCGCCTTAACATTATCAATTGTGTCCGA 80124 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||||||| | ||||||||||| ||||| | || || ||||| |||||||| Sbjct 80125 ACTCTCAACTTCCAAGGTTATAGTTTTTCCTGTCAAGGTCTTGACAAAGATTTGCAT 80181 >seq7954 Length=38498 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| || | | || || ||||| || | || | ||| || || ||| Sbjct 10805 ATTTGCATACCTCCACGAAGACGGAGGACCAGGTGGAGAGTTGACTCCTTTTGGATGTTA 10864 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | ||||| | | ||| || | || |||||||| || || |||| || || Sbjct 10865 TAGTCTGCCAACGTACGACCATCCTCGAGCTGCTTTCCGGCGAAGATCAATCGTTGCTGG 10924 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||| || || || || | ||||| ||| ||| || |||||| Sbjct 10925 TCCGGTGGAATTCCTTCTTTGTCCTGAATCTTTGCTTTTACATTATCAATCGTGTCGGAA 10984 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || |||||||| || || || || || || || ||||| || ||||| Sbjct 10985 CTCTCAACCTCGAGAGTTATGGTCTTGCCGGTAAGGGTCTTAACAAAGATCTGCAT 11040 >seq1123 Length=183110 Score = 107 bits (118), Expect = 3e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || ||||| || | | |||| | ||| || | ||| ||||| ||||| || | || Sbjct 67610 ATGTTATAATCAGCAAGGGTTCGACCATCTTCGAGTTGCTTTCCAGCAAAGATCAGCCTT 67551 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| || || || ||||||||||| ||||| || |||| ||||| ||| ||| ||| Sbjct 67550 TGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATCTTGGCTTTTACATTGTCAATGGTA 67491 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || ||| || || ||||| || || || || || ||||| ||||| || || |||||| Sbjct 67490 TCAGAACTTTCCACCTCTAGGGTGATGGTCTTTCCAGTTAGGGTTTTGACGAAGATTTGC 67431 Query 193359 AT 193360 || Sbjct 67430 AT 67429 Score = 107 bits (118), Expect = 3e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 193197 GTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATT 193256 ||||| ||| || | || || || |||||||| |||||||||||||| || || ||| Sbjct 67820 GTTCTGCCATCTTCAAGCTGCTTGCCAGCAAAAATCAATCTCTGTTGATCCGGGGGAATT 67761 Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCT 193316 || || |||||||| || |||| || | ||| ||| || || || |||||| || Sbjct 67760 CCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCAATCGTGTCAGAGCTCTCAACCTCA 67701 Query 193317 AGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| || || || ||||| ||||| |||||||| Sbjct 67700 AGGGTAATGGTTTTCCCAGTAAGAGTTTTGACAAAGATTTGCAT 67657 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || | | |||| ||| | || | |||||| ||| || || || Sbjct 68342 ATACCACCACGCAGCCTCAACACCAAATGAAGAGTTGACTCTTTCTGAATGTTGTAATCA 68283 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| || | || || || || ||||| | ||||| |||||||| Sbjct 68282 GCTAGGGTCCGGCCATCCTCAAGCTGCTTCCCAGCGAAAATAAGCCTCTGCTGATCAGGG 68223 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||| || || || || | || | || ||||||||| ||| || Sbjct 68222 GGAATGCCCTCTTTGTCCTGGATCTTAGCCTTGACGTTATCAATAGTATCCGAACTTTCC 68163 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || |||||||| || || || || || || ||||||||||||||| Sbjct 68162 ACCTCAAGTGTTATAGTCTTGCCGGTAAGGGTCTTCACAAATATTTGCATT 68112 >seq4972 Length=58182 Score = 100 bits (110), Expect = 5e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || || || | |||| ||| || || || ||||| | || ||||| Sbjct 8828 CGGAGGACGAGGTGTAGAGTAGACTCCTTTTGGATGTTGTAGTCTGCTAGGGTTCTGCCG 8887 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||||||||| || ||||| | | |||||| ||||| || || || || || Sbjct 8888 TCCTCCAATTGTTTTCCTGCGAAAATAAGCCGCTGTTGGTCAGGCGGGATGCCCTCCTTG 8947 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| || | ||| ||| || |||||| |||||| || ||||| || Sbjct 8948 TCTTGGATCTTGGCCTTGACATTATCAATTGTGTCGGAACTCTCAACCTCGAGAGTAATT 9007 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| ||||| || || | ||||| Sbjct 9008 GTCTTGCCCGTTAGAGTTTTCACGAAAACCTGCAT 9042 >seq4136 Length=93312 Score = 93.3 bits (102), Expect = 8e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 |||||||||||| | || || | ||| || | ||||| || || || || | || Sbjct 34754 AATATTATAGTCAGCCAAAGTACGGCCATCCTCAAGCTGTTTACCAGCGAAGATAAGCCT 34813 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 |||||| || || || || || || || ||||| ||||| | || | ||| ||| || Sbjct 34814 CTGTTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATTTTAGCCTTAACATTATCAATGGT 34873 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||||| ||||| || || || |||||||| || || ||||| || ||||| ||||| Sbjct 34874 GTCGGAGCTTTCAACCTCAAGGGTAATAGTTTTCCCAGTAAGCGTCTTAACAAAAATTTG 34933 Query 193358 CATT 193361 |||| Sbjct 34934 CATT 34937 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||| || ||||| || | |||||| || || ||||| || |||||||||||||| || Sbjct 35703 TGTTTACCAGCAAAGATGAGTCTCTGCTGGTCTGGAGGGATCCCTTCTTTATCTTGGATC 35762 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | |||| ||| || || ||||| || || || || || || || || || Sbjct 35763 TTAGCCTTTACATTATCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATGGTCTTGCCG 35822 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || ||||| Sbjct 35823 GTTAGGGTTTTAACGAAGATCTGCAT 35848 >seq2414 Length=83374 Score = 86.0 bits (94), Expect = 1e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||||||||| || || | | ||| || || || || || ||||| ||||| || || Sbjct 34181 TGTTTTCCGGCGAATATAAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTATCCTGGATC 34122 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| || || ||||| || ||||| || | ||||| || || || Sbjct 34121 TTGGCCTTCACATTGTCGATTGTGTCGGAGGATTCAACCTCCAAGGTTATGGTCTTCCCC 34062 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTTATTAGTAAAATAA 193376 ||||| ||||| || || || ||||| || ||||||| || Sbjct 34061 GTTAGAGTTTTCACGAAGATCTGCATCTTCGCAGTAAAAAAA 34020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898647742954800