Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq4136 113 8e-20 seq979 113 8e-20 seq1123 107 3e-18 seq646 104 4e-17 seq10374 98.7 2e-15 seq4972 91.5 3e-13 seq3095 87.8 3e-12 seq3534 86.0 1e-11 seq341 86.0 1e-11 >seq4136 Length=93312 Score = 113 bits (124), Expect = 8e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | |||||||||||||| || | |||||| ||||| || || || ||||||| Sbjct 35692 CGTCCTCAAGCTGTTTACCAGCAAAGATGAGTCTCTGCTGGTCTGGAGGGATCCCTTCTT 35751 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 ||||||| || ||| ||||||||| || || || || ||| || || || || | Sbjct 35752 TATCTTGGATCTTAGCCTTTACATTATCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGA 35811 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| || || |||| ||||||| ||| |||||||| Sbjct 35812 TGGTCTTGCCGGTTAGGGTTTTAACGAAGATCTGCAT 35848 Score = 111 bits (122), Expect = 3e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| | || || || || | ||| | ||| || ||||||||| || Sbjct 34707 ATACCACCACGAAGCCTCAACACCAAGTGGAGAGTGGACTCCTTTTGAATATTATAGTCA 34766 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| || | || || | ||||||||||| || || | ||||||||||| ||| Sbjct 34767 GCCAAAGTACGGCCATCCTCAAGCTGTTTACCAGCGAAGATAAGCCTCTGTTGGTCTGGT 34826 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| |||||| || |||||| || || || || ||| Sbjct 34827 GGGATGCCCTCCTTGTCTTGGATTTTAGCCTTAACATTATCAATGGTGTCGGAGCTTTCA 34886 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || ||||| ||||| ||||| | || |||| || || |||||| Sbjct 34887 ACCTCAAGGGTAATAGTTTTCCCAGTAAGCGTCTTAACAAAAATTTGCATT 34937 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||| |||||||| || | ||||||||||| ||||| || || || || ||||| ||| Sbjct 35019 TGTTTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATT 35078 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || |||||| || || || || ||| || || || ||||| ||||| || Sbjct 35079 TTGGCCTTGACATTATCAATGGTGTCGGAGCTTTCAACCTCCAGGGTAATTGTTTTTCCG 35138 Query 172044 GTTAATGTTTTAATGAATATCTGCATT 172070 || | || || | ||| ||||||||| Sbjct 35139 GTGAGGGTCTTGACGAAAATCTGCATT 35165 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||||||||| || || | |||||||| || ||||| || || || |||||||| || Sbjct 35247 TGTTTACCAGCGAAGATGAGCCTCTGTTGATCTGGTGGGATGCCCTCCTTATCTTGGATC 35306 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || |||||| || || || || ||| || || || ||||| ||||| ||| Sbjct 35307 TTCGCCTTGACATTATCAATGGTGTCGGAGCTTTCCACCTCAAGGGTAATTGTTTTTCCA 35366 Query 172044 GTTAATGTTTTAATGAATATCTGCATT 172070 || | || || | ||| ||||||||| Sbjct 35367 GTGAGGGTCTTGACGAAAATCTGCATT 35393 >seq979 Length=283929 Score = 113 bits (124), Expect = 8e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | |||||||||||||||||| | || |||||||| || || || ||||| ||| Sbjct 158036 TCCTCGAGTTGTTTACCAGCAAAAATCAGCCTTTGTTGGTCTGGAGGAATCCCTTCCTTA 157977 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| |||||| ||||| || || ||||| || ||| || || ||||| ||| Sbjct 157976 TCTTGGATTTTAGCCTTTACGTTGTCAATGGTATCGGAGCTTTCCACCTCGAGAGTGATG 157917 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || ||||| | ||| |||||||| Sbjct 157916 GTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 157882 >seq1123 Length=183110 Score = 107 bits (118), Expect = 3e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || |||||||| | | | ||| | || || | ||| || |||||||| || | || Sbjct 67610 ATGTTATAATCAGCAAGGGTTCGACCATCTTCGAGTTGCTTTCCAGCAAAGATCAGCCTT 67551 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 |||||||| ||||| ||||||||||| ||||| || || ||||||||| || ||| Sbjct 67550 TGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATCTTGGCTTTTACATTGTCAATGGTA 67491 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || ||| || ||||| || ||||| || ||||||| ||||| | ||| || ||| Sbjct 67490 TCAGAACTTTCCACCTCTAGGGTGATGGTCTTTCCAGTTAGGGTTTTGACGAAGATTTGC 67431 Query 172068 AT 172069 || Sbjct 67430 AT 67429 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || ||||| | |||| | | | || |||| || || || ||||| || || ||| Sbjct 68978 ATGTTGTAATCAGCCAAAGTCCTTCCATCCTCCAGCTGCTTTCCTGCAAAGATCAACCTC 68919 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||||||||| || || || || || || || || || |||||| ||| || Sbjct 68918 TGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTATCTATGGTG 68859 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || || || || ||||| || || || || | |||||||| |||||| ||| Sbjct 68858 TCAGAGCTCTCCACCTCGAGGGTAATAGTCTTCCCCGTGAGTGTTTTAACGAATATTTGC 68799 Query 172068 AT 172069 || Sbjct 68798 AT 68797 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || ||||||||||| ||||||||||| || || || ||||| || |||||||| || Sbjct 67802 TGCTTGCCAGCAAAAATCAATCTCTGTTGATCCGGGGGAATTCCCTCCTTATCTTGGATC 67743 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || ||||| || || || || || || || || ||||||||||| ||| Sbjct 67742 TTGGCCTTGACATTGTCAATCGTGTCAGAGCTCTCAACCTCAAGGGTAATGGTTTTCCCA 67683 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | ||||| | || || ||||| Sbjct 67682 GTAAGAGTTTTGACAAAGATTTGCAT 67657 >seq646 Length=154290 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| | || || || || | ||| | ||| || ||| || ||||| Sbjct 48804 ATGCCACCACGAAGCCTCAACACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAATCA 48863 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| || | || || | ||||||||||| || || | ||||||||||| ||| Sbjct 48864 GCCAAAGTACGGCCATCCTCAAGCTGTTTACCAGCGAAGATAAGCCTCTGTTGGTCCGGT 48923 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || |||||||| || ||| |||||| || || || || || Sbjct 48924 GGGATGCCTTCCTTGTCTTGTATCTTGGCTTTAACATTATCAATGGTGTCGGAGCTCTCC 48983 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||||||||| || || | || || | ||| |||||||| Sbjct 48984 ACCTCCAAAGTAATGGTTTTCCCGGTAAGGGTCTTGACGAAAATCTGCAT 49033 Score = 93.3 bits (102), Expect = 8e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | ||| ||||||||||| || | ||| |||||||| ||||| || || || ||| Sbjct 49335 TCCTCGAGTTGCTTACCAGCAAAGATGAGTCTTTGTTGGTCTGGTGGGATGCCCTCCTTA 49394 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || || || |||||| || || || || || || || || |||||| Sbjct 49395 TCTTGGATCTTGGCCTTGACATTATCAATGGTGTCGGAGCTCTCCACCTCAAGGGTAATG 49454 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| ||||| | || || | ||| ||||||||| Sbjct 49455 GTTTTCCCAGTAAGGGTCTTCACGAAAATCTGCATT 49490 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || |||| | || || || | ||| ||| || || || ||||| Sbjct 49032 ATACCACCCCTGAGTCTGAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAATCA 49091 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | || || | || |||||||| || || | ||||||||||| || Sbjct 49092 GCAAGAGTACGGCCATCCTCTAGCTGCTTACCAGCGAAGATGAGCCTCTGTTGGTCTGGG 49151 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || ||||| || || || || |||||| ||||| || || ||| Sbjct 49152 GGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTATCAATAGTGTCGGAACTTTCA 49211 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || ||||||||||| ||||| | || |||| ||| || |||||| Sbjct 49212 ACCTCGAGCGTAATGGTTTTCCCAGTAAGGGTCTTAACGAAGATTTGCATT 49262 >seq10374 Length=62593 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || ||||| | ||| | ||| || || || ||||||| | | || | || || Sbjct 57842 ACCAAATGAAGAGTGGACTCCTTCTGGATGTTGTAATCTGCCAGGGTACGGCCATCCTCA 57783 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 | |||||||||||||||||| | ||| || ||||| || || || ||||| || ||||| Sbjct 57782 AGTTGTTTACCAGCAAAAATAAGTCTTTGCTGGTCTGGAGGGATCCCTTCCTTGTCTTGG 57723 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || || ||||| || || ||||| || ||| ||||| || || || || || Sbjct 57722 ATCTTGGCCTTTACGTTGTCAATGGTATCAGAGCTTTCCACTTCGAGGGTGATAGTCTTG 57663 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || ||||| | ||| |||||||| Sbjct 57662 CCAGTCAAGGTTTTCACGAAAATCTGCAT 57634 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| ||||||||||| |||||||| || |||| ||| ||||| ||||| || || |||| Sbjct 59158 CGTCCTCCAATTGTTTCCCAGCAAAGATCAATCGCTGCTGGTCTGGTGGAATACCCTCTT 59099 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | || || || ||| || ||||| || || || || || || || | ||| | Sbjct 59098 TGTCCTGAATCTTAGCCTTCACATTGTCAATGGTGTCAGAACTCTCCACCTCCAAAGTGA 59039 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | || || ||||| || || |||| || || ||||| Sbjct 59038 TAGTCTTTCCAGTCAAAGTCTTAACAAAAATTTGCAT 59002 >seq4972 Length=58182 Score = 91.5 bits (100), Expect = 3e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 171867 TGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGT 171926 |||| ||||| ||| || || || || |||| || | || |||| ||||||||| Sbjct 8840 TGTAGAGTAGACTCCTTTTGGATGTTGTAGTCTGCTAGGGTTCTGCCGTCCTCCAATTGT 8899 Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 || || || ||||| | | |||||||||||| || || || || || ||||| || || Sbjct 8900 TTTCCTGCGAAAATAAGCCGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCTTGGATCTTG 8959 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 || |||||| || || || || || || || |||||||| || || || ||| Sbjct 8960 GCCTTGACATTATCAATTGTGTCGGAACTCTCAACCTCGAGAGTAATTGTCTTGCCCGTT 9019 Query 172047 AATGTTTTAATGAATATCTGCAT 172069 | ||||| | ||| | |||||| Sbjct 9020 AGAGTTTTCACGAAAACCTGCAT 9042 >seq3095 Length=123113 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 39126 CATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 39185 || |||||||| |||||||| || || | || || || || || |||||||||| Sbjct 111585 CAAGCAAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAAAAAGTTAAT 111526 Query 39186 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA-AAACTACTAGAAAAGAA 39244 || ||||||||||| | |||||| ||||||||||| | ||| || || | || ||||| Sbjct 111525 CCAGGCATTAATCCACGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCCGAGAAGAA 111467 Query 39245 TATACCCTCCACACACGCAAATGCTATTAT 39274 || || || || || ||||| || | ||| Sbjct 111466 AATCCCTTCGACGCAAGCAAAGGCGAGTAT 111437 >seq3534 Length=113076 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| | || |||||||| | || || | || | || | || || ||||| | Sbjct 92787 TCATAGTTCCTCCTCTAAGCCTCAAAACGAGGTGAAGTGTTGATTCCTTTTGGATATTGT 92728 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||||| || | ||| | || |||||||||||||||||||| || | ||||| |||| Sbjct 92727 AATCTGCCAAGGTCCGTCCATCTTCCAATTGTTTACCAGCAAATATAAGCCTCTGCTGGT 92668 Query 171955 CAGGTGGTATTCCTTCTTTATC 171976 |||| ||||| |||||||| || Sbjct 92667 CAGGAGGTATACCTTCTTTGTC 92646 >seq341 Length=228855 Score = 86.0 bits (94), Expect = 1e-11 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 39117 TATAGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTA 39176 || || || || |||||||| ||||| || || || | ||| || || || || Sbjct 2763 TAGAGCAAGCACGCAAAATCACAGTGTAAGCCCTCATCTCGAGAGATCAACTCGTTCGAG 2822 Query 39177 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA-AAACTACT 39235 ||||||||||| ||||||||||||| ||| || ||||||||||||| ||| || || | Sbjct 2823 AAAGTTAATCCAGGCATTAATCCTCGCTTCTTTAGCCAAAATATTG-CGCAGAAGCTTCC 2881 Query 39236 AGAAAAGAATATACCCTCCACACACGCAAATGCTATTAT 39274 || ||||| || || || || || || || || | ||| Sbjct 2882 CGAGAAGAAAATCCCTTCAACGCAAGCGAAGGCGAGTAT 2920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904123209387000