Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq62581 293 8e-75 seq84895 114 4e-21 >seq62581 Length=657 Score = 293 bits (324), Expect = 8e-75 Identities = 464/661 (70%), Gaps = 12/661 (2%) Strand=Plus/Plus Query 39884 GAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCGTCCAGGGGGATGTTCTC 39943 ||| |||||||||| ||||||||| ||||||||||| |||| || | | || || ||| Sbjct 3 GAGGGTGTCGCCCCGGGCCAGCAGGTCGTACGTCGCCTGGTCCTCGAAGTCGAGGTCCTC 62 Query 39944 CAGGTCGACGTGCTCCCCACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGATCGT 40003 ||| ||| || | |||||| | |||||| | ||||||| | | || ||| Sbjct 63 CAGCACGAGGTCGATGTCGCGGTTGCGCTTGATGTTGATCAGCGCGTCGTCGAGGACCGT 122 Query 40004 GAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTA 40063 ||||| || || || |||||||||||||| | ||| || || |||||||| ||||||| Sbjct 123 CAGGTTGCGCAGGCCCAGGAAGTCCATCTTGACCAGCCCGAGCGCCTCGCACATCGGGTA 182 Query 40064 GTCGAACTGCGTGATCGTCGCGCCGTCCTGCGGTCGCACCCACACCGGGATGTGGTCGAC 40123 ||||||||||||||| |||||||||||||| ||| | | || | | ||||| Sbjct 183 GTCGAACTGCGTGATGATCGCGCCGTCCTGCTCGCGCTTCATGATGGGCACGATGTCGAT 242 Query 40124 CAGAGGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCATCTGCCGGACGAGACC 40183 ||| || ||| |||||||| || ||||| ||||| || ||| ||| |||| | || Sbjct 243 CAGCGGATCGCTCGACATGATGACGCCGGCCGCGTGGACGCCCCACTGACGGATCTGGCC 302 Query 40184 TTCGAGACCGAGCGCGGT---GTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCGTAGAT 40240 || || || || ||||| || |||| | || | |||| | ||| | ||| | Sbjct 303 CTCCAGGCCCAGGGCGGTCTGGTAGATG--CGCC-GGACGTCGGCGTCCTCGTCGTGCAG 359 Query 40241 GCCCCGGATCTCGGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATCCCGTCGAG 40300 |||| ||| || | || ||||||| || || || ||| | || | ||| Sbjct 360 CTTGCGGAAGTCGCCGCCGTCGCCGTACCGCTTGTCGTCCTTGTCGAACAGGCCCTTGAG 419 Query 40301 GGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCGACCTG 40360 | | |||||||| | |||||||||| ||||||||| | ||||||| | Sbjct 420 CGTGACGCCCTTGCCCATGATGTCGGCCGGGAGCGCCTTGGTGATGCGCTCGCCGTGCGA 479 Query 40361 GAAGGGCTTGTCCAGCACGCGGGCTGCGTCCTTCATCGCG---TTGCGCGCCTTGATCCG 40417 ||| || | ||||| ||||| || |||||||| |||||| ||| | ||||| || Sbjct 480 GAACGGGTAGTCCATGACGCGCGCGGCGTCCTTGATCGCGGCCTTG---GACTTGAGGCG 536 Query 40418 TCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGAT 40477 ||| ||||||||||| |||||| || | |||||||| | ||||||| |||| Sbjct 537 GCCGAACGTCGCGATCATCGCGACGCGCTCCTCGCCGTACTTGTTGCTGACGTAGCGGAT 596 Query 40478 CACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTC 40537 ||||||| ||||| || || |||||||||||||||| |||||||| ||| ||||| Sbjct 597 GACCTCGCTGCGACGACGCTCGTCGAAGTCGATGTCGAAGTCGGGCATCGACGGACGCTC 656 Query 40538 G 40538 | Sbjct 657 G 657 >seq84895 Length=1121 Score = 114 bits (126), Expect = 4e-21 Identities = 464/715 (65%), Gaps = 36/715 (5%) Strand=Plus/Plus Query 40967 CATCTCGGCGGCCGACTTCAGGTAGTACCCGGAGCCCTCGAAGCGGAAGCGGTGAGGGTT 41026 |||||||||||| ||||| | |||| | || | ||||| |||||||| |||| Sbjct 58 CATCTCGGCGGCGGACTTGATGTAGAAGTCGTTGGAGTCGAACTTGAAGCGGTTGGGGTC 117 Query 41027 ATCGAGCGTGGTGCCGGTCTGGACGCACAGCAGTGCATCGTGAGCGACCGACTCCTCGGC 41086 ||| ||| |||||| ||||||||||||||| || ||| || | | ||||||| Sbjct 118 GGTGAGGGTGCTGCCGGACTGGACGCACAGCAGCGCCGAGTGGGCCTCGGCGTCCTCGGG 177 Query 41087 GGTGACGTAGTGGGAATCGTTCGTGACCACCGGAGTGAGCGCGAGGTGCTTCCCGAGCCG 41146 | |||||| || ||||| || | | | | || |||| | | |||||| Sbjct 178 ACTCGTGTAGTGCGAGTCGTTGGTCGCGATGGCCGGCAGGCCGAGATCGGCCTTGAGCCG 237 Query 41147 GTACAGATCCTCGCGGACCCGGCGCTCGATCTCGATGCCGTGGTCCATGAGTTCGAGCAG 41206 ||| | ||||| || ||||||||||||| ||||||||||| || ||||| | Sbjct 238 CAGCAGCCCGTCGCGCACGACCCGCTCGATCTCGAGACCGTGGTCCATCAGCTCGAGGAA 297 Query 41207 GTAGCGCTCGCGACCCAGGATCTCCAGCCAGTCGCCAGCGGCCCTGAC---TGCCTCGTC 41263 | || ||| || | ||| ||| | | ||| |||||| | | |||| || Sbjct 298 GAAGTTCTCCTTGCCGAAGATGTCCTGGAACTCG---GCGGCCGAGGCGCGCGCCTTCTC 354 Query 41264 GTACTGACCCAGGTTCAGCCTGGTCATGACTTCGCCACCAGGGCACCCCGTGGTTCCGAT 41323 ||| | || | | ||||| ||| || ||||| |||||||| || || |||| Sbjct 355 GTAGTTGCCGATGCGCAGCCACGTCTGGATCTCGCCCGAGGGGCACCCGGTCGTGGCGAT 414 Query 41324 GATGCCCTCGCTGCA-CTCGGCGACGAGTTCCTTGTCGAGGCGGGCGTACTTGCCCATCA 41382 | ||||| || | | | | || | || || ||| |||| ||| ||||| | Sbjct 415 CAGGCCCTTGCCGTAGCGCTGC-AGCAGGTCGCGGTC--GGCGCGCG-GCTTGCGGTACT 470 Query 41383 GCCCCTCCTGG-TAG-GAGCGAGACGTGATGCGCATGAGGTTGTGAAGGCCCGTCTTGTT 41440 | ||||| || | | | |||| | |||||| | |||||||| | |||| || | Sbjct 471 GGCCCTCGAGGCTCGCGTACGAGCC--GATGCGGAACAGGTTGTGCATGCCCTCGGTGGT 528 Query 41441 CTGCGCGAGCATGGTCATGTGCGTGTACGCACCGTTACCCGACACGTCGTAACGCTTCTG 41500 || | |||| |||||||| ||||| || || || | ||||||| || || | Sbjct 529 CTCGGACAGCAGCGTCATGTGGGTGTAGGCGCCACGTCCGGCCACGTCG----GCGTC-G 583 Query 41501 CTC-GGGCGACC----CCCACTTGACCCGGTCAAGGCTTCGCCTGTCGCCGG-----GGG 41550 || |||| || ||||| | ||| | |||| || || || ||| Sbjct 584 ATCTTGGCGCCCTTGTTCCACT--GCACGGCC--TTCTTCTCCGTGCGGGGGATGTTGGG 639 Query 41551 CG--ACGTAGGCTTCCATTCCCACGATGGGCTTGATGCCCGCTGCGGTGGCCTGCTTGAA 41608 || | ||| || ||||| || | ||| ||||||| ||| || |||||| || | Sbjct 640 CGTCAGGTACGCCTCCATGCCGATGATCGGCTTGACGCCGTGCGCCTTGGCCTTGCTGTA 699 Query 41609 CAGCTCGTAGGCACCATGCATGTGGCCGTGGTCGGTCACTGCGATGGCTCGCATC 41663 | |||||||| || |||| || |||||||||||||| |||||||| ||||| Sbjct 700 GAAGTCGTAGGCGCCGTGCAGGTTGCCGTGGTCGGTCATCGCGATGGCCGGCATC 754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163710591994020