Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq62581 293 8e-75 seq84895 199 1e-46 >seq62581 Length=657 Score = 293 bits (324), Expect = 8e-75 Identities = 464/661 (70%), Gaps = 12/661 (2%) Strand=Plus/Plus Query 40172 GAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCGTCCAGGGGGATGTTCTC 40231 ||| |||||||||| ||||||||| ||||||||||| |||| || | | || || ||| Sbjct 3 GAGGGTGTCGCCCCGGGCCAGCAGGTCGTACGTCGCCTGGTCCTCGAAGTCGAGGTCCTC 62 Query 40232 CAGGTCGACGTGCTCCCCACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGATCGT 40291 ||| ||| || | |||||| | |||||| | ||||||| | | || ||| Sbjct 63 CAGCACGAGGTCGATGTCGCGGTTGCGCTTGATGTTGATCAGCGCGTCGTCGAGGACCGT 122 Query 40292 GAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTA 40351 ||||| || || || |||||||||||||| | ||| || || |||||||| ||||||| Sbjct 123 CAGGTTGCGCAGGCCCAGGAAGTCCATCTTGACCAGCCCGAGCGCCTCGCACATCGGGTA 182 Query 40352 GTCGAACTGCGTGATCGTCGCGCCGTCCTGCGGCCGAACCCACACCGGGATGTGGTCGAC 40411 ||||||||||||||| |||||||||||||| || | | || | | ||||| Sbjct 183 GTCGAACTGCGTGATGATCGCGCCGTCCTGCTCGCGCTTCATGATGGGCACGATGTCGAT 242 Query 40412 CAGCGGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCATCTGCCGGACGAGACC 40471 |||||| ||| |||||||| || ||||| ||||| || ||| ||| |||| | || Sbjct 243 CAGCGGATCGCTCGACATGATGACGCCGGCCGCGTGGACGCCCCACTGACGGATCTGGCC 302 Query 40472 TTCGAGACCGAGCGCGGT---GTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCGTAGAT 40528 || || || || ||||| || |||| | || | |||| | ||| | ||| | Sbjct 303 CTCCAGGCCCAGGGCGGTCTGGTAGATG--CGCC-GGACGTCGGCGTCCTCGTCGTGCAG 359 Query 40529 GCCCCGGATCTCGGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATCCCGTCGAG 40588 |||| ||| || | || ||||||| || || || ||| | || | ||| Sbjct 360 CTTGCGGAAGTCGCCGCCGTCGCCGTACCGCTTGTCGTCCTTGTCGAACAGGCCCTTGAG 419 Query 40589 GGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCGACCTG 40648 | | |||||||| | |||||||||| ||||||||| | ||||||| | Sbjct 420 CGTGACGCCCTTGCCCATGATGTCGGCCGGGAGCGCCTTGGTGATGCGCTCGCCGTGCGA 479 Query 40649 GAAGGGCTTGTCCAGCACGCGGGCTGCGTCCTTCATCGCG---TTGCGCGCCTTGATCCG 40705 ||| || | ||||| ||||| || |||||||| |||||| ||| | ||||| || Sbjct 480 GAACGGGTAGTCCATGACGCGCGCGGCGTCCTTGATCGCGGCCTTG---GACTTGAGGCG 536 Query 40706 TCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGAT 40765 ||| ||||||||||| |||||| || | |||||||| | ||||||| |||| Sbjct 537 GCCGAACGTCGCGATCATCGCGACGCGCTCCTCGCCGTACTTGTTGCTGACGTAGCGGAT 596 Query 40766 CACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTC 40825 ||||||| ||||| || || |||||||||||||||| |||||||| ||| ||||| Sbjct 597 GACCTCGCTGCGACGACGCTCGTCGAAGTCGATGTCGAAGTCGGGCATCGACGGACGCTC 656 Query 40826 G 40826 | Sbjct 657 G 657 >seq84895 Length=1121 Score = 199 bits (220), Expect = 1e-46 Identities = 467/698 (67%), Gaps = 10/698 (1%) Strand=Plus/Plus Query 41255 CATCTCGGCGGCCGACTTCAGGTAGTACCCGGAGCCCTCGAAGCGGAAGCGGTGAGGGTT 41314 |||||||||||| ||||| | |||| | || | ||||| |||||||| |||| Sbjct 58 CATCTCGGCGGCGGACTTGATGTAGAAGTCGTTGGAGTCGAACTTGAAGCGGTTGGGGTC 117 Query 41315 ATCGAGCGTGGTGCCGGTCTGGACGCACAGCAGTGCATCGTGAGCGACCGACTCCTCGGC 41374 ||| ||| |||||| ||||||||||||||| || ||| || | | ||||||| Sbjct 118 GGTGAGGGTGCTGCCGGACTGGACGCACAGCAGCGCCGAGTGGGCCTCGGCGTCCTCGGG 177 Query 41375 GGTGACGTAGTGGGAATCGTTCGTGACCACCGGAGTGAGCGCGAGGTGCTTCCCGAGCCG 41434 | |||||| || ||||| || | | | | || |||| | | |||||| Sbjct 178 ACTCGTGTAGTGCGAGTCGTTGGTCGCGATGGCCGGCAGGCCGAGATCGGCCTTGAGCCG 237 Query 41435 GTACAGATCCTCGCGGACCCGGCGCTCGATCTCGATGCCGTGGTCCATCAGCTCCAGGAA 41494 ||| | ||||| || ||||||||||||| ||||||||||||||||| ||||| Sbjct 238 CAGCAGCCCGTCGCGCACGACCCGCTCGATCTCGAGACCGTGGTCCATCAGCTCGAGGAA 297 Query 41495 GTACCGGTCACGCCCGAAGACCTCCAGGTACCGACCGGCCTCCTTCACG-GCCTCGTCGT 41553 | | || ||||||| ||| || || ||||| | || |||| |||| Sbjct 298 GAAGTTCTCCTTGCCGAAGATGTCCTGGAACTCGGCGGCCGAGG-CGCGCGCCTTCTCGT 356 Query 41554 ACTGCCCGAGGTTCAGCCGGGTCATGATCGCACCGCCAGGACATCCGGTCGTGACGACCA 41613 | | |||| | ||||| ||| |||| | || || || ||||||||| ||| || Sbjct 357 AGTTGCCGATGCGCAGCCACGTCTGGATCTCGCCCGAGGGGCACCCGGTCGTGGCGATCA 416 Query 41614 GGCCCTCGTTGT-GCTCGGCGACCAGGTCGAAGTCCATGCGCGGGTACTTCCCGAGCAGG 41672 |||||| | || || | || | ||||||| ||| |||||| ||| | | | || Sbjct 417 GGCCCTTGCCGTAGCGCTGC-AGCAGGTCGCGGTCGGCGCGCGG---CTTGCGGTACTGG 472 Query 41673 CCCTCCTGGTACGACCGCGAGCTGAGCTTCATGAGGTTGTGCAGGCCGGTCTTGTTCGTG 41732 ||||| || || ||||| || | |||||||||| ||| || || | Sbjct 473 CCCTCGAGGCTCGCGTACGAGCCGATGCGGAACAGGTTGTGCATGCCCTCGGTGGTCTCG 532 Query 41733 GAGAGGATCGTGAGGTGCGTGTACGCACCCCGACCGCTCACGTCGTACCGCTTCTGGTCT 41792 || || | ||| | ||| ||||| || || || ||| ||||||| ||| | | Sbjct 533 GACAGCAGCGTCATGTGGGTGTAGGCGCCACGTCCGGCCACGTCGGCGTCGATCTTGGCG 592 Query 41793 TCCGTGCCCCACTGGACTCGCTCCTGGTCGAAGCGGGAG---TCCGGGGCCATGTACGCC 41849 || || |||||| || || || || ||||| | | || | || ||||||| Sbjct 593 CCCTTGTTCCACTGCACGGCCTTCTTCTCCGTGCGGGGGATGTTGGGCGTCAGGTACGCC 652 Query 41850 TCGATGCCGATGATCGGCTTGACCCCAGCGGCCTGCGCCGAGGTGAAGAAGTCGTACGCA 41909 || |||||||||||||||||||| || |||| ||| | || |||||||||| || Sbjct 653 TCCATGCCGATGATCGGCTTGACGCCGTGCGCCTTGGCCTTGCTGTAGAAGTCGTAGGCG 712 Query 41910 CCGTGAAGGTTGCCGTGGTCCGTCACTGCGACGGCAGG 41947 ||||| |||||||||||||| |||| |||| ||| || Sbjct 713 CCGTGCAGGTTGCCGTGGTCGGTCATCGCGATGGCCGG 750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164669571523020