Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq62581 275 2e-69 seq84895 89.7 2e-13 >seq62581 Length=657 Score = 275 bits (304), Expect = 2e-69 Identities = 460/661 (70%), Gaps = 12/661 (2%) Strand=Plus/Plus Query 39632 GAGCGTGTCGCCCCTGGCCAGCAGCTCGTAGGTCGGGGCGTCGTCCAGAGGGATGTTCTC 39691 ||| |||||||||| ||||||||| ||||| |||| ||| || | || || ||| Sbjct 3 GAGGGTGTCGCCCCGGGCCAGCAGGTCGTACGTCGCCTGGTCCTCGAAGTCGAGGTCCTC 62 Query 39692 CAGGTCGACGTGCTCCCCACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGATCGT 39751 ||| ||| || | |||||| | |||||| | ||||||| | | || ||| Sbjct 63 CAGCACGAGGTCGATGTCGCGGTTGCGCTTGATGTTGATCAGCGCGTCGTCGAGGACCGT 122 Query 39752 GAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTA 39811 ||||| || || || |||||||||||||| | ||| || || |||||||| ||||||| Sbjct 123 CAGGTTGCGCAGGCCCAGGAAGTCCATCTTGACCAGCCCGAGCGCCTCGCACATCGGGTA 182 Query 39812 GTCGAACTGCGTGATCGTCGCGCCGTCCTGCGGCCGAACCCACACCGGGATGTGGTCGAC 39871 ||||||||||||||| |||||||||||||| || | | || | | ||||| Sbjct 183 GTCGAACTGCGTGATGATCGCGCCGTCCTGCTCGCGCTTCATGATGGGCACGATGTCGAT 242 Query 39872 CAGAGGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCATCTGCCGGACGAGACC 39931 ||| || ||| |||||||| || ||||| ||||| || ||| ||| |||| | || Sbjct 243 CAGCGGATCGCTCGACATGATGACGCCGGCCGCGTGGACGCCCCACTGACGGATCTGGCC 302 Query 39932 TTCGAGACCGAGCGCGGT---GTCGATGACCTCCTTGGCGTCCGGGTCGGAGCCGTAGAT 39988 || || || || ||||| || |||| | || | |||| | ||| | ||| | Sbjct 303 CTCCAGGCCCAGGGCGGTCTGGTAGATG--CGCC-GGACGTCGGCGTCCTCGTCGTGCAG 359 Query 39989 GCCCCGGATCTCGGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATGCCTTCGAG 40048 |||| ||| || | || ||||||| || || || ||| | ||| | ||| Sbjct 360 CTTGCGGAAGTCGCCGCCGTCGCCGTACCGCTTGTCGTCCTTGTCGAACAGGCCCTTGAG 419 Query 40049 GGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCGACCTG 40108 | | |||||||| | |||||||||| ||||||||| | ||||||| | Sbjct 420 CGTGACGCCCTTGCCCATGATGTCGGCCGGGAGCGCCTTGGTGATGCGCTCGCCGTGCGA 479 Query 40109 GAAGGGCTTGTCGAGCACGCGAGCCGCGTCCTTCATCGCG---TTGCGCGCCTTGATCCG 40165 ||| || | ||| | ||||| || |||||||| |||||| ||| | ||||| || Sbjct 480 GAACGGGTAGTCCATGACGCGCGCGGCGTCCTTGATCGCGGCCTTG---GACTTGAGGCG 536 Query 40166 TCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGAT 40225 ||| ||||||||||| |||||| || | |||||||| | ||||||| |||| Sbjct 537 GCCGAACGTCGCGATCATCGCGACGCGCTCCTCGCCGTACTTGTTGCTGACGTAGCGGAT 596 Query 40226 GACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTC 40285 |||||||| ||||| || || |||||||||||||||| |||||||| ||| ||||| Sbjct 597 GACCTCGCTGCGACGACGCTCGTCGAAGTCGATGTCGAAGTCGGGCATCGACGGACGCTC 656 Query 40286 G 40286 | Sbjct 657 G 657 >seq84895 Length=1121 Score = 89.7 bits (98), Expect = 2e-13 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 40715 CATCTCTTCGGCGGACTTCAGGTAGTACCCGGAGCCCTCGAAGCGGAAGCGGTTCGGGTT 40774 |||||| |||||||||| | |||| | || | ||||| ||||||||| |||| Sbjct 58 CATCTCGGCGGCGGACTTGATGTAGAAGTCGTTGGAGTCGAACTTGAAGCGGTTGGGGTC 117 Query 40775 GTCGAGCGTGGTGCCGGTCTGGACGCACAGCAGTGCATCGTGAGCGACCGACTCCTCGGC 40834 | ||| ||| |||||| ||||||||||||||| || ||| || | | ||||||| Sbjct 118 GGTGAGGGTGCTGCCGGACTGGACGCACAGCAGCGCCGAGTGGGCCTCGGCGTCCTCGGG 177 Query 40835 GGTGACGTAGTGGGAATCGTTCGTGACCACCGGAGTGAGCGCGAGGTGCTTCCCGAGCCG 40894 | |||||| || ||||| || | | | | || |||| | | |||||| Sbjct 178 ACTCGTGTAGTGCGAGTCGTTGGTCGCGATGGCCGGCAGGCCGAGATCGGCCTTGAGCCG 237 Query 40895 GTACAGGTCGTCACGGACCCGGCGCTCGATCTCGATGTCGTGGTCCATGAGTTCGAG 40951 ||| |||| || || ||||||||||||| |||||||||| || ||||| Sbjct 238 CAGCAGCCCGTCGCGCACGACCCGCTCGATCTCGAGACCGTGGTCCATCAGCTCGAG 294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163151187268770