Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq341 127 2e-23 seq3095 123 3e-22 seq58707 91.5 2e-12 >seq341 Length=228855 Score = 127 bits (140), Expect = 2e-23 Identities = 177/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || ||||| ||||| || ||||| ||||| || ||||| || | |||| | | ||| Sbjct 3072 GAATGGATATTCTCAATCGCGATTTGGAACCCATAAAACGCACGAGCCTCCGAGATTTGA 3131 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||||| || || |||||||| ||||||||||| |||||||||| Sbjct 3132 ACCTCCTTCATGAACCTTCCAGCGAGGTTCTCCAAAACGATGCCGTCTGAGGCGGCGAAA 3191 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || | |||||| || || || |||||| || | || ||||||| Sbjct 3192 AAGGCAAGAATGTGCTTAATGAAATGCTTCTCGTCCTCAGTCAGTTTTTCCCAGTGCTGT 3251 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 | || | | || ||||| || || ||||| | ||||||||| || || |||||| Sbjct 3252 ATATCCTGGGACAAATCGACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCTTTCTTGTAC 3311 Query 869873 ATCTCCCA 869880 || ||||| Sbjct 3312 ATTTCCCA 3319 >seq3095 Length=123113 Score = 123 bits (136), Expect = 3e-22 Identities = 193/274 (70%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || ||||| ||||| || ||||||||||| || ||||| || | | |||| | | ||| Sbjct 111285 GAATGGATATTCTCAATCGCGATCTGGAACCCATAAAAAGCACGCGCCTCCGAGATTTGA 111226 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||||||||| || || || ||||| || ||||||||| |||||| ||| Sbjct 111225 ACCTCTTTCATGAACCTCCCAGCTAGATTCTCCAAAACAATGCCGTCGGAGGCGGCAAAA 111166 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || || ||||| || || || ||| || ||| | | ||||||| | Sbjct 111165 AAGGCAAGAACATGCTTAATGAAATGCTTCTCATCCTCGGTCAATTTATCCCAGTG--CT 111108 Query 869813 GT--GTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 || || | | || ||||| || || ||||| | ||||||||| ||||| |||| Sbjct 111107 GTACATCCTGGGACAAATCAACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCCTTCTTGT 111048 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 |||| ||||| | ||| | || | || ||||| Sbjct 111047 ACATTTCCCAAATTTGGGGATATTGAATTGGGAA 111014 >seq58707 Length=1165 Score = 91.5 bits (100), Expect = 2e-12 Identities = 117/160 (73%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || ||||| ||||| || ||||| ||||| || ||||| || | |||| | | ||| Sbjct 690 GAATGGATATTCTCAATCGCGATTTGGAACCCATAAAACGCACGAGCCTCCGAGATTTGA 749 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||||||||| || | | ||| |||||||| ||||| |||| |||||||||| Sbjct 750 ACCTCCTTCATAAATCTTCTGGCGAGGTTCTCCAAAACGATATCGTCTGAGGCGGCGAAA 809 Query 869753 AAAG-CCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCG 869791 || | | || |||||||| || || || |||||| ||| Sbjct 810 AAGGACAAGAACGTGCTTAATGAAATGCTTCTCGTCCTCG 849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6099793179901255