Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq203 107 2e-18 seq646 104 2e-17 seq7954 102 7e-17 seq1123 100 2e-16 seq10374 95.1 1e-14 seq979 91.5 1e-13 seq3688 84.2 2e-11 >seq203 Length=254899 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || || || || ||||| || ||| | ||| ||| | Sbjct 80409 ATGCAAATTTTTGTCAAGACCTTGACAGGAAAAACAATAACCTTGGAAGTTGAGAGTTCT 80350 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || ||| |||||| || || ||||| | || ||||||| Sbjct 80349 GACACAATTGACAATGTTAAAGCTAAGATTCAAGATAAGGAAGGGATCCCTCCGGATCAA 80290 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | ||| ||||||||||||||||||| | | || ||||||| |||||| Sbjct 80289 CAACGTTTGATCTTTGCTGGTAAACAGCTGGAGGATGGCCGGACTCTGGCGGACTACAAC 80230 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || ||||| || ||||| | ||| |||| Sbjct 80229 ATCCAAAAGGAGTCTACCCTCCACCTGGT 80201 >seq646 Length=154290 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | ||||| ||||||||||| | || |||| | Sbjct 49033 ATGCAGATTTTCGTCAAGACCCTTACCGGGAAAACCATTACTTTGGAGGTGGAGAGCTCC 48974 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| ||||| ||||| |||||| | || ||| ||| Sbjct 48973 GACACCATTGATAATGTTAAAGCCAAGATACAAGACAAGGAAGGCATCCCACCGGACCAA 48914 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | || ||||||||||| ||||||| | | || |||| ||||||||| Sbjct 48913 CAGAGGCTTATCTTCGCTGGTAAACAGCTTGAGGATGGCCGTACTTTGGCTGATTACAAC 48854 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || || | ||| ||||||| || || || || || Sbjct 48853 ATTCAGAAGGAGTCCACTCTCCACTTGGTGTTGAGGCTTCGTGGTGG 48807 >seq7954 Length=38498 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || | || || ||||||||||| | || |||| | | Sbjct 10584 ATGCAAATTTTTGTCAAGACCCTGACGGGAAAAACCATTACTTTGGAGGTGGAGAGTTCC 10525 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || |||||| ||||| || ||| | || ||| ||| Sbjct 10524 GACACAATTGATAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCACCGGACCAA 10465 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||||| |||| ||| || ||||| || || |||| || ||| |||| |||||||| Sbjct 10464 CAAAGACTCATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACACTGGCCGATTACAAT 10405 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || ||||| || || || ||||| |||| Sbjct 10404 ATCCAAAAGGAGTCCACCCTGCACTTGGT 10376 >seq1123 Length=183110 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||||||||| || || | |||||||| || || || | || ||| | Sbjct 68112 AATGCAAATATTTGTGAAGACCCTTACCGGCAAGACTATAACACTTGAGGTGGAAAGTTC 68171 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | || || ||||| |||||||| ||| | ||| ||||| Sbjct 68172 GGATACTATTGATAACGTCAAGGCTAAGATCCAGGACAAAGAGGGCATTCCCCCTGATCA 68231 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || ||||||| || || || ||||| ||||||| | | || | || |||||||| Sbjct 68232 GCAGAGGCTTATTTTCGCTGGGAAGCAGCTTGAGGATGGCCGGACCCTAGCTGATTACAA 68291 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||| ||||| || || | || ||||||| || ||||| || || Sbjct 68292 CATTCAGAAAGAGTCAACTCTTCATTTGGTGTTGAGGCTGCGTGGTGG 68339 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 |||||||| ||| | || ||| || || ||| | |||| ||| || |||||||| || Sbjct 67978 GACAAAGAGGGCATTCCTCCGGACCAGCAGAGATTGATTTTTGCTGGCAAACAGCTAGAA 68037 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| ||||||| | ||||||||||| || || || || || | ||| ||||| || Sbjct 68038 GATGGCAGAACACTTGCGGATTACAATATCCAGAAGGAGAGCACCCTTCACTTGGTGCTA 68097 Query 110486 AGACTGCGAGGGGGAA 110501 || || || || |||| Sbjct 68098 AGGCTCCGTGGAGGAA 68113 >seq10374 Length=62593 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329 ||||| || || || ||||| || || ||||| || || ||| ||||| ||| || || Sbjct 57634 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACTATCACCCTCGAAGTGGAAAGCTCT 57693 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || ||| | | | | ||||| ||||| ||||| ||||| | || || Sbjct 57694 GA---TACCATTGACAACGTAAAGGCCAAGATCCAAGACAAGGAAGGGATCCCTCCAGAC 57750 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||||||||||||| ||| |||||||| || ||||||| | | || |||| |||||| Sbjct 57751 CAGCAAAGACTTATTTTTGCTGGTAAACAACTTGAGGATGGCCGTACCCTGGCAGATTAC 57810 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| || || || || || | || |||| | ||| || | || |||| Sbjct 57811 AACATCCAGAAGGAGTCCACTCTTCATTTGGTCCTCAGATTGAGGGGAGGAA 57862 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-GAGC-CT 110329 |||||||| ||||| ||||| | || ||||| ||||| || |||| || |||| || Sbjct 58090 ATGCAAATCTTTGTTAAAACCCTGACTGGCAAGACCATAACTCTCGAGGTCGAGAGCTCT 58149 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || | | | | || ||| ||||| |||||||| || | || || Sbjct 58150 GAC---ACCATTGACAACGTCAAAGCCAAGATCCAGGACAAAGAGGGTATTCCTCCAGAC 58206 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || |||||| | |||| ||| || || ||||||||||||| | | || | || |||||| Sbjct 58207 CAGCAAAGATTGATTTTTGCAGGCAAGCAGCTGGAGGATGGCCGTACTCTAGCAGATTAC 58266 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||||| || || || ||||| ||||| Sbjct 58267 AACATTCAGAAGGAGAGCACTCTGCACTTGGTG 58299 >seq979 Length=283929 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||| || || | || ||||| ||||| || | || ||| Sbjct 158109 AATGCAAATCTTTGTTAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAGAGCTC 158168 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| ||| | | | | || ||| ||||| ||||||||||| | ||| || || Sbjct 158169 CGACACTATTGACAACGTTAAAGCCAAGATCCAGGACAAAGAAGGTATTCCCCCAGACCA 158228 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||||| | |||| |||||| || ||||||||||||| | | || | || |||||||| Sbjct 158229 GCAAAGATTGATTTTTGCGGGCAAGCAGCTGGAGGATGGCCGGACTCTAGCAGATTACAA 158288 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||| || || || | ||| ||||| | || || | || |||| Sbjct 158289 CATTCAGAAGGAGAGCACTCTTCACTTGGTGCTTAGGCTAAGGGGAGGAA 158338 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 |||||||| |||||||| || || || ||||| || || ||| | || |||| || | Sbjct 158566 ATGCAAATTTTTGTCAAGACCTTGACAGGCAAGACAATCACCTTGGAGGTGGAGAGCTCA 158625 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||| | | | || || ||||| ||||| || || | || || || Sbjct 158626 -GACACTATTGATAATGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACCA 158684 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| || ||||| | || || || ||||| ||||||| | | || ||||||| ||||| Sbjct 158685 ACAGAGGCTTATCTTCGCTGGGAAGCAGCTTGAGGATGGCCGTACCTTGGCGGACTACAA 158744 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||| ||||| ||||| ||||| ||||| Sbjct 158745 CATTCAGAAAGAGTCTACTCTGCACTTGGTG 158775 >seq3688 Length=93992 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| ||||| ||||||| || || ||||| |||| ||| | | Sbjct 93554 ATGCAGATCTTTGTGAAAACCCTAACCGGTAAGACGATTACTCTCGAGGTTGAGAGTTCC 93613 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || ||||| ||||| || ||| | || ||| || Sbjct 93614 GACACAATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCGCCGGACCAG 93673 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | ||||||| || || |||||| ||||||| | ||||| | || || |||||| Sbjct 93674 CAGCGGCTTATTTTCGCAGGAAAACAGTTGGAGGACGGTAGAACCCTAGCCGACTACAAC 93733 Query 110453 ATTCAAAAAGAATCTACGTTGCAC 110476 |||||||| || ||||| ||||| Sbjct 93734 ATTCAAAAGGAGTCTACTCTGCAC 93757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412391204650895