Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3095 107 3e-17 >seq3095 Length=123113 Score = 107 bits (118), Expect = 3e-17 Identities = 194/284 (68%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || ||||| | || ||||| || |||||||| || || ||||| || |||||||| || Sbjct 111525 CCAGGCATTAATCCACGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAA 111466 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || || |||||| |||||| ||| | ||||| || || | || ||| || Sbjct 111465 ATCCCTTCGACGCAAGCAAAGGCGAGTATGCGCTCAGCGAAGGATTCTGAGCCGTCA--- 111409 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 ||||| | ||||||| ||||| |||| || | || || || ||||| ||| Sbjct 111408 ---ATCCAGCGGAGGGCCCACTTGGCCTTCTTCCCAACACAAGGAACGGTCTCGATTGCG 111352 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 | || || | | |||||| ||| ||||| | |||| || | || || ||| Sbjct 111351 TGGAAAAGCCGATTCTTCTCCTCCGAATCCTTTATATAGGACTCAAGAAGAAGACTGTAC 111292 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAA 794663 |||| || ||||| || || || ||||||||||| |||||||| Sbjct 111291 ATCTCGGAATGGATATTCTCAATCGCGATCTGGAACCCATAAAA 111248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7906724281172085