Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq7954 96.9 5e-15 seq203 87.8 3e-12 >seq7954 Length=38498 Score = 96.9 bits (106), Expect = 5e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || |||||||| |||||| | || || || | || Sbjct 10583 TGCAAATTTTTGTCAAGACCCTGACGGGAAAAACCATTACTTTGGAGGTGGAGAGTTCCG 10524 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || ||| || || || || ||||| ||||| || |||| Sbjct 10523 ACACAATTGATAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCACCGGACCAAC 10464 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||||||||||||||| || |||||| | || ||| || || | | ||||| |||| Sbjct 10463 AAAGACTCATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACACTGGCCGATTACAATA 10404 Query 146212 TACAAAAAGAATCGAC 146227 | ||||| || || || Sbjct 10403 TCCAAAAGGAGTCCAC 10388 Score = 87.8 bits (96), Expect = 3e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || |||||||| || ||| | || || || | || Sbjct 10355 TGCAAATCTTCGTGAAGACCCTGACCGGAAAAACCATCACTTTGGAGGTGGAGAGTTCCG 10296 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| ||| || || || || || ||||| ||||| || |||| Sbjct 10295 ACACAATTGACAATGTGAAAGCAAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAAC 10236 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || ||||||||||| || ||||| | || ||| |||| | | ||||| |||| Sbjct 10235 AGAGGCTCATTTTTGCTGGAAAACAGCTCGAAGATGGACGAACACTGGCTGATTACAATA 10176 Query 146212 TACAAAAAGAATCGAC 146227 | ||||| ||||| || Sbjct 10175 TCCAAAAGGAATCCAC 10160 >seq203 Length=254899 Score = 87.8 bits (96), Expect = 3e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || || ||||||||||| || || | || || || | | Sbjct 80180 TGCAAATCTTTGTCAAGACCTTGACAGGAAAAACTATAACCTTGGAAGTTGAGAGTTCGG 80121 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || ||||| ||| ||| ||||| || || || || |||| Sbjct 80120 ACACAATTGATAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATCCCTCCGGACCAAC 80061 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| || || |||||||| |||||| | || ||| || || | | |||||||| | Sbjct 80060 AAAGGCTTATATTTGCAGGCAAACAACTTGAAGATGGAAGGACCCTTGCGGATTATAACA 80001 Query 146212 TACAAAAAGAATCGAC 146227 | || || || ||||| Sbjct 80000 TCCAGAAGGAGTCGAC 79985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785286728933800