Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq89515 91.5 5e-14 seq2388 91.5 5e-14 seq340 91.5 5e-14 seq56535 84.2 8e-12 >seq89515 Length=155578 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| ||| Sbjct 38196 TTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAAC 38255 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 38256 TGCTCTACCCCGC 38268 >seq2388 Length=66280 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| ||| Sbjct 30320 TTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAAC 30261 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 30260 TGCTCTACCCCGC 30248 >seq340 Length=283748 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| ||| Sbjct 179938 TTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAAC 179879 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 179878 TGCTCTACCCCGC 179866 >seq56535 Length=1205 Score = 84.2 bits (92), Expect = 8e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 50108 TGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCG 50167 ||||||||| | | ||||||||||| ||| ||| |||| |||||||||| |||||||||| Sbjct 206 TGGTTGCGGGGACAGGATTTGAACCTGCGACCTTCAGGTTATGAGCCTGACGAGCTACCG 147 Query 50168 AACTGCTCTACTCCGC 50183 |||||| || |||| Sbjct 146 GGCTGCTCCACCCCGC 131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181410157500930