Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4560 96.9 8e-15 seq3095 96.9 8e-15 seq635 84.2 5e-11 >seq4560 Length=76140 Score = 96.9 bits (106), Expect = 8e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||||||||||| || | || |||||||||||||||||| || || |||||| Sbjct 70332 AGGCATTTGAATGATGGGGACTTTGTCCTGTTCAATAGGCAACCAAGTCTCCACAAAATG 70273 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 || || |||| |||| | |||| | | || | || || || |||| | | Sbjct 70272 TCCATAATGGGGCATAGAATCAAGATCATGCCTTACTCAACCTTCCGCCTAAACTTGTCT 70213 Query 305426 GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 | | | |||| || ||||| ||||||||||| ||||||||||| |||||||| || || Sbjct 70212 GTTACTTCGCCCTACAATGCTGATTTTGATGGGGATGAAATGAACATGCATGTTCCCCAG 70153 Query 305486 TCA 305488 ||| Sbjct 70152 TCA 70150 >seq3095 Length=123113 Score = 96.9 bits (106), Expect = 8e-15 Identities = 250/376 (66%), Gaps = 4/376 (1%) Strand=Plus/Plus Query 131867 GCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTT 131926 || |||||||| || ||||| || ||||| || || ||||| || || |||||||| Sbjct 111443 GCCTTTGCTTGCGTCGAAGGGATTTTCTTCTCGGGAAGCTTCTGCGCGATATTTTGGCTA 111502 Query 131927 AAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAA 131986 || ||||||||||| ||||||||| | | || || || | || |||||| ||||||| Sbjct 111503 AAAAAGCGTGGATTAATGCCTGGATTAACTTTTTCAAACGAGTTAATCTCGCGAGATGAG 111562 Query 131987 GCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGAT-AAACTTGATGA 132045 | || || ||| |||||| | |||| || | || ||| ||||| || Sbjct 111563 GGTTTACACTGTGATTTTGCTTGCCTGCTCTACAG-CCTTCTGAGGATGAAACTCAGCGA 111621 Query 132046 AAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAGA 132105 || | || |||| | || || || |||||||||| ||| ||| | || Sbjct 111622 GGATCGAGTCAAGGGACTTGTTGCTGACGCGGTGGATATCGAGAGGGAATTTGTCTGCGA 111681 Query 132106 AGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCT-ATGAAGGAGTACATTGAAT 132164 ||| | ||||| || | || ||||||| ||| ||| |||| | |||||||||| Sbjct 111682 TGCTCTTCCTTGTGCCCTGGTCGGAATGAATGGTGA-TCTGATGAGTCAATACATTGAAT 111740 Query 132165 TCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATAACACCCAAAACC 132224 | || || ||| | | | || ||||||||| ||| | || || ||||||| Sbjct 111741 TTGTAGCCGATAGACTGCTGAATGCACTTGGATACAGCAAATTATACAATGTTCAAAACC 111800 Query 132225 CCTATACATGGATGGA 132240 | | | |||||||| Sbjct 111801 CATTTGATTGGATGGA 111816 >seq635 Length=323349 Score = 84.2 bits (92), Expect = 5e-11 Identities = 130/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 |||||||||||| || | || ||||||||| ||||||| || || |||||||| Sbjct 76566 CATTTGAATGACGGGGACTTTGTCCTGTTCAATCGGCAACCGAGTCTCCACAAAATGTCA 76507 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTAAGTG 305426 || |||| ||| | | |||| || || || | || || || |||| | || Sbjct 76506 ATAATGGGGCATCGAAT-AAAG-ATCATGCCTTACTCAACCTTCCGCCTAAACTTGTCTG 76449 Query 305427 CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAAT 305486 | | |||| || ||||| ||||||||||| ||||||||||| |||||||| || || | Sbjct 76448 TTACTTCGCCCTACAATGCTGATTTTGATGGGGATGAAATGAACATGCATGTTCCCCAGT 76389 Query 305487 CA 305488 || Sbjct 76388 CA 76387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185451631418915