Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq10374 102 5e-17 seq6805 102 5e-17 seq2414 100 2e-16 seq979 98.7 7e-16 seq689 96.9 2e-15 seq2660 91.5 1e-13 seq630 87.8 1e-12 seq7954 82.4 5e-11 seq1123 82.4 5e-11 >seq10374 Length=62593 Score = 102 bits (112), Expect = 5e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| ||||| |||||||| |||| || || | | |||| ||||||||||| || ||||| Sbjct 59193 CTCCTTTTGGATGTTGTAGTCGGCCAGGGTCCTTCCGTCCTCCAATTGTTTCCCAGCAAA 59134 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||||| |||||||| ||| | || | ||| |||||||| ||| || ||| |||| Sbjct 59133 GATCAATCGCTGCTGGTCTGGTGGAATACCCTCTTTGTCCTGAATCTTAGCCTTC-ACAT 59075 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | |||||| ||||| || | ||||| || || || || || || || | Sbjct 59074 TGTCAATGGTGTCAGAACTCTCCACCTCCAAAGTGATAGTCTTTCCAGTCAAAGTCTTAA 59015 Query 33737 CAAAGATCTGCAT 33749 |||| || ||||| Sbjct 59014 CAAAAATTTGCAT 59002 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || ||||||||||| || || ||||||||||| | || || || | || || Sbjct 58299 CACCAAGTGCAGAGTGCTCTCCTTCTGAATGTTGTAATCTGCTAGAGTACGGCCATCCTC 58240 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || || ||||||||||| | ||||| ||| | || | ||| |||||||| Sbjct 58239 CAGCTGCTTGCCTGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCCTCTTTGTCCTG 58180 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCG 33715 || || | || || | ||| | |||||| ||| || || || | || || | Sbjct 58179 GATCTT-GGCTTTGACGTTGTCAATGGTGTCAGAGCT---CTCGACCTCGAGAGTTATGG 58124 Query 33716 TTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || | ||||| |||||||| ||||| Sbjct 58123 TCTTGCCAGTCAGGGTTTTAACAAAGATTTGCAT 58090 >seq6805 Length=45365 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| || ||| ||| || || |||||||| |||| | Sbjct 31787 CCACCACGGAGACGGAGTACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 31728 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| |||| || | || |||||||| || || | |||||||| || | || Sbjct 31727 AGGGTGCGTCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGG 31668 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| || || ||| | ||| ||| ||||| ||| || ||||| Sbjct 31667 ATACCCTCCTTGTCCTGGATCTTGGCTTTGA-CATTGTCGACGGTATCGGAGGACTCCAC 31609 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || ||||| || |||| ||||| || ||||||||||| Sbjct 31608 CTCCAGGGTAATGGTTTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 31561 >seq2414 Length=83374 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || |||||| || || || |||||||| || | ||| ||||| |||| |||| ||| Sbjct 34238 TGGAGAGTGGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGACCGTCCTCCAGCTGT 34179 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 |||||||| || || | ||||||||| ||| |||| | ||||| || || || || Sbjct 34178 TTTCCGGCGAATATAAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTATCCTGGATCTTG 34119 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 ||| |||| ||| | |||||| ||||| || || | || || || || || || Sbjct 34118 GCCTTC-ACATTGTCGATTGTGTCGGAGGATTCAACCTCCAAGGTTATGGTCTTCCCCGT 34060 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 || ||||| || ||||||||||| Sbjct 34059 TAGAGTTTTCACGAAGATCTGCAT 34036 >seq979 Length=283929 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || ||||||||||| || || ||||||||||| | || || || | || || Sbjct 158319 CACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCTGCTAGAGTCCGGCCATCCTC 158260 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || || ||||||||||| | ||||| ||| | || | |||||||||||| Sbjct 158259 CAGCTGCTTGCCCGCAAAAATCAATCTTTGCTGGTCTGGGGGAATACCTTCTTTGTCCTG 158200 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || | || ||| | ||| | |||||| || || |||| ||||| || | Sbjct 158199 GATCTT-GGCTTTAACGTTGTCAATAGTGTCGGAGCTCTCGACCTCAAGAGTGATGGTCT 158141 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || |||||||| ||||| Sbjct 158140 TGCCAGTCAGGGTCTTAACAAAGATTTGCAT 158110 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/197 (71%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| || |||||||| || | || || | | |||| ||||| || || |||||||| Sbjct 158985 CTCTTTCTGGATGTTGTAGTCCGCCAGGGTCCTTCCGTCCTCCAACTGCTTCCCGGCAAA 158926 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||||| |||||||| ||| | || | |||||||||||| ||| || ||| || | Sbjct 158925 GATCAACCGCTGCTGGTCTGGTGGAATACCTTCTTTGTCCTGAATCTTGGCCTTC-ACGT 158867 Query 33678 AGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTT 33733 ||| | || || ||| ||| || || | ||||| || || || || || || | Sbjct 158866 TGTCAATAGTATCCGAGCT---TTCAACCTCCAAAGTGATGGTCTTCCCAGTCAAAGTCT 158810 Query 33734 TTACAAAGATCTGCATA 33750 | ||||| || |||||| Sbjct 158809 TGACAAATATTTGCATA 158793 >seq689 Length=155235 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || || ||||| |||| |||||| || |||| || | ||||| |||||||| Sbjct 95878 TCCTTCTGGATATTGTAGTCGGCGAGTGTACGACCGTCTTCAAGCTGTTTCCCGGCAAAT 95937 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | ||||||||| || |||| | || || ||||| || || ||| | ||| Sbjct 95938 ATTAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTAGCTTTGA-CATT 95996 Query 33679 GTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 |||| ||||||| |||||||| || | || || ||||| || || | ||||| || Sbjct 95997 GTCAATGGTGTCGGAGGATTCCACCTCCAGGGTTATGGTTTTCCCCGTGAGGGTTTTCAC 96056 Query 33738 AAAGATCTGCAT 33749 ||||||||||| Sbjct 96057 GAAGATCTGCAT 96068 >seq2660 Length=84674 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || |||||| ||| || || |||||||| |||| ||| ||||| |||| || | || Sbjct 252 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 311 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 ||||| ||||| || | ||||||||| || | || | ||||| ||||| || || Sbjct 312 TTTCCAGCAAATATGAGACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTG 371 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 |||| ||| ||| | ||| || ||||| || || | || || || || || || Sbjct 372 GCCTTCA-CATTGTCGATGGTATCAGAGGATTCAACCTCCAAGGTTATTGTCTTCCCCGT 430 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 || ||||| || ||||||||||| Sbjct 431 TAGGGTTTTCACGAAGATCTGCAT 454 >seq630 Length=274473 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 |||||| ||| ||| || || |||||||| |||| ||| || ||| |||| || | || Sbjct 11154 ATGTAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGTCCGTCCTCTAGCTG 11095 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || ||||| || || | ||| ||||| || |||| | || || ||||| || || Sbjct 11094 CTTCCCGGCGAAGATAAGACGTTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTT 11035 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 ||| | | | ||| | || ||| |||||||| || | || || ||||| || | Sbjct 11034 GGCTTTGA-CGTTGTCGATCGTATCGGAGGATTCCACCTCCAGGGTTATGGTTTTCCCCG 10976 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 ||| ||||| || ||||||||||| Sbjct 10975 TTAGGGTTTTCACGAAGATCTGCAT 10951 >seq7954 Length=38498 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 ||||| | || |||||| ||| || || ||||||||||| | ||| || | | | || Sbjct 9917 AACACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCCGCGAGAGTCCTTCCATCC 9976 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | ||| || || ||||| ||||| | |||||| || | || | || || ||||| Sbjct 9977 TCAAGTTGCTTCCCAGCAAATATCAACCTCTGCTGGTCCGGTGGGATGCCCTCCTTGTCT 10036 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGAT 33713 || || || | |||| ||| | ||||| ||| ||||| || | ||||| Sbjct 10037 TGTATCTT-TGCCTTTACATTGTCGATTGTGTCAGAGCT---CTCCACCTCTAAGGTGAT 10092 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| || |||| || || |||||||||||||| Sbjct 10093 GGTTTTTCCAGTTAGGGTCTTCACAAAGATCTGCAT 10128 >seq1123 Length=183110 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 33537 TAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTC 33596 || |||||| || || |||||||| || || || |||||||| | ||||| | | || Sbjct 68097 TAGCACCAAGTGAAGGGTGCTCTCCTTCTGGATATTGTAATCCGCAAGTGTTCTGCCATC 68038 Query 33597 GTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 || | ||||| || ||||||||||| | |||||| || | || | || |||||||| Sbjct 68037 TTCTAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCCGGAGGAATGCCCTCTTTGTC 67978 Query 33657 GGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCG 33715 ||||| || | || | ||| | ||||| |||||| |||| || || | Sbjct 67977 CTGGATTTT-TGCCTTGACGTTGTCAATAGTGTCAGAACTTTCCACCTCAAGTGTTATAG 67919 Query 33716 TTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || ||||| | || || ||||| || ||||| Sbjct 67918 TCTTCCCTGTAAGGGTCTTCACAAAAATTTGCAT 67885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328345395748800