Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq89515 596 4e-166 seq971 174 5e-39 seq3049 122 3e-23 seq10355 113 1e-20 seq5532 80.6 8e-11 seq559 80.6 8e-11 >seq89515 Length=155578 Score = 596 bits (660), Expect = 4e-166 Identities = 728/983 (74%), Gaps = 10/983 (1%) Strand=Plus/Minus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 ||||||| | || ||| | ||||||||||| |||| |||||||| ||||||| Sbjct 1519 TAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 1460 Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAG 19628 || | || ||| || | |||| || |||||||| |||||||| ||||| |||| Sbjct 1459 CCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAG 1401 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688 | || |||||||| || || ||||| || || || || |||||||||||||| || | Sbjct 1400 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTA 1341 Query 19689 TATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 19746 | || || ||| | |||| | | ||| || || || | ||||| |||||||| || Sbjct 1340 TCTCAGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCCAATCTG 1283 Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 19806 |||||| || ||||||||||| | |||||||| || || | |||| | || | Sbjct 1282 GGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCT 1223 Query 19807 CCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACT 19866 |||||| | |||| | | ||||||||| || |||||||||||||| | || || Sbjct 1222 ACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 1163 Query 19867 AGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGT 19926 || ||| | ||||||||| |||||| || || ||||| |||||||| || | || || Sbjct 1162 GGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGT 1103 Query 19927 CTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCT 19985 ||||| | ||||||| ||||||| || || || || |||| ||||||| | || || | Sbjct 1102 -TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTT 1044 Query 19986 CGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGT 20045 | ||||| ||||||| |||| | |||||||| || || || ||||| || |||||||| | Sbjct 1043 CTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCAT 984 Query 20046 TCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTT 20105 | |||||| | || || |||||||||||||| || || |||||||| || ||||| |||| Sbjct 983 TTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGCGCTATGCATGGTT 924 Query 20106 CGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGT 20164 | |||| || | || | ||| | | || || || ||| | ||| | || | ||| Sbjct 923 C-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 865 Query 20165 TACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGA 20224 |||| || || ||||| ||||| || ||||| |||||||||||||||||||| ||||| Sbjct 864 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGC 805 Query 20225 CGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCT 20284 || || ||||||||||| ||| ||||||||| ||||| ||||||||||||| ||| Sbjct 804 CGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGCT 745 Query 20285 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAAT 20344 || ||||| || ||||| || |||||| |||| || || | || ||||| || || Sbjct 744 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAAC 685 Query 20345 CTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACT 20404 || || |||||||| || ||||| ||| | | || | | || ||||| ||| ||||| Sbjct 684 CTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGCCGTGTAATTAATACT 625 Query 20405 TGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCT 20464 |||||||| || | || |||||||| || || | || || ||||||||||| |||||| Sbjct 624 TGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 565 Query 20465 CATAACTTCCCACTTGACCTTGC 20487 ||||||||||| || ||||| || Sbjct 564 CATAACTTCCCTCTAGACCTAGC 542 >seq971 Length=113153 Score = 174 bits (192), Expect = 5e-39 Identities = 220/300 (73%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 19730 CACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCG 19789 ||||| |||||||| |||||||| || ||||||||||| | |||||||| || || Sbjct 73176 CACTTTTACCCAATCTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCT 73117 Query 19790 TTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGG 19849 | |||| | || | |||||| | |||| | | ||||||||| || |||||| Sbjct 73116 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 73057 Query 19850 GAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTT 19909 ||||||| | | || || ||| | ||||||||| |||||| || || |||| ||| Sbjct 73056 AAACTTAGTTTCCATCTGGGTATGCGACCTTGGATTACTGTTGCATATTCAACTCCTGTT 72997 Query 19910 GCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGC 19968 ||||| || || || ||||| | ||||||| ||||||| || || || || |||| Sbjct 72996 GCAGCTGCTATCGCTGT-TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGA 72938 Query 19969 TATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAA 20028 ||||||| | || || || ||||| ||||||| |||| | |||||||| || || ||||| Sbjct 72937 TATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAA 72878 >seq3049 Length=46004 Score = 122 bits (134), Expect = 3e-23 Identities = 204/298 (68%), Gaps = 24/298 (8%) Strand=Plus/Minus Query 20171 TTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTG 20230 || || ||||| ||||| || ||||| || |||||||||||||| || ||||| | || Sbjct 6005 TTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGGTATTTTGGCCCATTA 5946 Query 20231 ATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCT---TGCTGCC 20287 ||||||||||| ||| ||||||||| | ||| ||||||||||||| |||| Sbjct 5945 ATCTTCCAATATGCTAGTTTCAACAACTCTCCTTCATTACACTTCTTCCTAGATGCTAAT 5886 Query 20288 TGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTG 20347 ||||| || ||| | || |||||| |||| || || | || ||||| Sbjct 5885 TGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGC---------- 5836 Query 20348 AACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGG 20407 |||| ||||| ||| | | || | | || ||||| ||| |||||||| Sbjct 5835 -----TTTC------AACCAATCCGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGG 5787 Query 20408 GCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTC 20465 ||||| || | || ||||| || || || | || || || || ||||| ||||||| Sbjct 5786 GCTGATATCATTAAGCGTGCCAACCTTGGTATGGAAGTTATACAGGAACGTAATGCTC 5729 >seq10355 Length=40529 Score = 113 bits (124), Expect = 1e-20 Identities = 102/127 (80%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 19988 GGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTC 20047 ||||| ||||||| |||| | |||||||| || || || ||||| || |||||||| || Sbjct 16694 GGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 16753 Query 20048 CACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCG 20107 |||||| | || || |||||||||||||| || || ||||| || || ||||| ||||| Sbjct 16754 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGCGCTATGCATGGTTC- 16812 Query 20108 CTTGTTA 20114 |||| || Sbjct 16813 CTTGGTA 16819 >seq5532 Length=39607 Score = 80.6 bits (88), Expect = 8e-11 Identities = 114/159 (72%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 20330 ACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGT 20389 || ||||| || || || || |||||||| || ||||| | | | ||| || Sbjct 3275 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAAGA--TGATAGTCAA----GGC 3222 Query 20390 CGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATG 20449 |||| ||| ||| ||||||||| || | ||| |||| | || || || || || ||| Sbjct 3221 GGTGTAATTAATATTTGGGCTGATATCATTAATTGTGCCAGCCTTGGTTTAGAAGTTATG 3162 Query 20450 CATGAACGGAATGCTCATAACTTCCCACTTGACCTTGCC 20488 ||| |||| ||||||||||||||||| | ||||| ||| Sbjct 3161 CATAAACGTAATGCTCATAACTTCCCTTTAGACCTAGCC 3123 >seq559 Length=144516 Score = 80.6 bits (88), Expect = 8e-11 Identities = 77/99 (78%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 20389 TCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGAT 20448 ||||| ||| ||||| ||| ||| || | |||||||| || ||||| | || || || Sbjct 93040 TCGTGCAATTAATACTGGGGTTGATATCATTAATCGTGCCAACCTCGGTATGGAAGTTAT 93099 Query 20449 GCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 ||| ||| | ||||||||||||||||| || ||||| || Sbjct 93100 GCACGAATGTAATGCTCATAACTTCCCTCTAGACCTAGC 93138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148670596380870