Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq89515 612 5e-171 seq971 188 2e-43 seq10355 138 3e-28 seq3049 113 1e-20 seq5532 89.7 1e-13 seq559 87.8 5e-13 >seq89515 Length=155578 Score = 612 bits (678), Expect = 5e-171 Identities = 731/982 (74%), Gaps = 10/982 (1%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||||| ||||||| || || ||||||||||| || || |||||||| || Sbjct 1524 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1465 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| || | || ||| | || ||| | ||| || |||||||||||||||||||| | Sbjct 1464 ATGATCCC-TACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTC 1407 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 |||| ||||| |||||||| || || || |||||| | || ||| ||||||||||||| Sbjct 1406 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 1347 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCC 18959 | || || || || ||| | |||| | | ||| || || || | ||||| ||||| Sbjct 1346 ATATTATCTCAGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCC 1289 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019 ||| |||||||| || ||||||||||| | |||||||| || || | |||| | Sbjct 1288 AATCTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAAT 1229 Query 19020 GGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTA 19079 || | |||||| | |||| || | ||||||||| || |||||||||||||| | Sbjct 1228 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTT 1169 Query 19080 TCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTC 19139 || || || ||||| ||||||||| |||||| || |||||||||||||| || || | Sbjct 1168 CCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 1109 Query 19140 TGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGG 19199 || || ||| | |||| ||| |||||||||| ||| || | ||||||| | || Sbjct 1108 CGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 1049 Query 19200 TATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCA 19259 ||| |||||| ||||||| |||| |||||||||||||||| || |||||||| ||||| Sbjct 1048 AATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 989 Query 19260 CCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCA 19319 ||| || |||||| | || || |||||||| |||||||| || ||||| || || ||||| Sbjct 988 CCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGCGCTATGCA 929 Query 19320 CGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACT 19378 ||||| |||| || | || | ||| | | ||||| || ||| | | |||| || Sbjct 928 TGGTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATG 870 Query 19379 ATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATT 19438 | || |||| || || ||||| ||||| |||||||| || || || |||||||| |||| Sbjct 869 AAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATT 810 Query 19439 TTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTT 19498 |||| || | || ||||| || || |||||||| ||||| |||| ||||| Sbjct 809 TTGGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCC 750 Query 19499 TGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCAT 19558 | |||||||||||||| || || || ||||| | || | || | ||||| ||||| | Sbjct 749 TAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTT 690 Query 19559 TCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTG 19618 ||||| | ||||| || || || ||||| ||| | |||| | | || ||||| ||| Sbjct 689 TCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGCCGTGTAATTA 630 Query 19619 ATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTA 19678 ||||||||||||| || | || ||||||||||| || | || || ||||| ||||||| Sbjct 629 ATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 570 Query 19679 ATGCTCATAACTTCCCACTTGA 19700 |||||||||||||||| || || Sbjct 569 ATGCTCATAACTTCCCTCTAGA 548 >seq971 Length=113153 Score = 188 bits (208), Expect = 2e-43 Identities = 221/299 (74%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 18949 CACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCG 19008 ||||| |||||||| |||||||| || ||||||||||| | |||||||| || || Sbjct 73176 CACTTTTACCCAATCTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCT 73117 Query 19009 TTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGG 19068 | |||| | || | |||||| | |||| || | ||||||||| || |||||| Sbjct 73116 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 73057 Query 19069 GAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTT 19128 ||||||| | | || || ||||| ||||||||| |||||| || ||| |||||||| Sbjct 73056 AAACTTAGTTTCCATCTGGGTATGCGACCTTGGATTACTGTTGCATATTCAACTCCTGTT 72997 Query 19129 GCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCT 19188 || || || || || ||| | |||| ||| |||||||||| ||| || | | Sbjct 72996 GCAGCTGCTATCGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGAT 72937 Query 19189 ATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA 19247 |||||| | || ||| |||||| ||||||| |||| |||||||||||||||| ||||| Sbjct 72936 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAA 72878 >seq10355 Length=40529 Score = 138 bits (152), Expect = 3e-28 Identities = 127/158 (80%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 19206 TGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTT 19265 |||||| ||||||| |||| |||||||||||||||| || |||||||| |||||||| || Sbjct 16693 TGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 16752 Query 19266 CCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTC 19325 |||||| | || || |||||||| |||||||| || |||||||| || ||||| ||||| Sbjct 16753 TCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGCGCTATGCATGGTTC 16812 Query 19326 GCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAA 19362 |||| || | || | ||| | | ||||| || ||| Sbjct 16813 -CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 16849 >seq3049 Length=46004 Score = 113 bits (124), Expect = 1e-20 Identities = 201/298 (67%), Gaps = 24/298 (8%) Strand=Plus/Minus Query 19390 TTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTT 19449 || || ||||| ||||| |||||||| ||||| || ||||||||||||||||| | | Sbjct 6005 TTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGGTATTTTGGCCCATTA 5946 Query 19450 ATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGC---T 19506 || ||||| || || |||||||| | ||| |||| ||||| | | ||| | Sbjct 5945 ATCTTCCAATATGCTAGTTTCAACAACTCTCCTTCATTACACTTCTTCCTAGATGCTAAT 5886 Query 19507 TGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTG 19566 |||||||| || | || ||||| | || | || | ||||| ||||| ||| Sbjct 5885 TGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC------ 5832 Query 19567 AATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGG 19626 ||||| ||| | |||| | | || ||||| ||| |||||||| Sbjct 5831 ---------------AACCAATCCGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGG 5787 Query 19627 GCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTC 19684 ||||| || | || ||||| ||||| || | || || || || ||||||||||||| Sbjct 5786 GCTGATATCATTAAGCGTGCCAACCTTGGTATGGAAGTTATACAGGAACGTAATGCTC 5729 >seq5532 Length=39607 Score = 89.7 bits (98), Expect = 1e-13 Identities = 110/151 (73%), Gaps = 6/151 (4%) Strand=Plus/Minus Query 19544 TAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACA 19603 ||||||| ||||| |||||| | ||||| || || || ||||| ||| | Sbjct 3280 TAAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAAGA------TGATAGTC 3227 Query 19604 ATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGG 19663 | || |||| ||| ||| ||||||||| || | ||| |||| | ||| || || || | Sbjct 3226 AAGGCGGTGTAATTAATATTTGGGCTGATATCATTAATTGTGCCAGCCTTGGTTTAGAAG 3167 Query 19664 TAATGCACGAACGTAATGCTCATAACTTCCC 19694 | ||||| |||||||||||||||||||||| Sbjct 3166 TTATGCATAAACGTAATGCTCATAACTTCCC 3136 >seq559 Length=144516 Score = 87.8 bits (96), Expect = 5e-13 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 19608 TCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAAT 19667 ||||| ||| ||||| ||| ||| || | |||||||| |||||||| | || || || Sbjct 93040 TCGTGCAATTAATACTGGGGTTGATATCATTAATCGTGCCAACCTCGGTATGGAAGTTAT 93099 Query 19668 GCACGAACGTAATGCTCATAACTTCCCACTTGA 19700 ||||||| ||||||||||||||||||| || || Sbjct 93100 GCACGAATGTAATGCTCATAACTTCCCTCTAGA 93132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140998760148870