Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq979 98.7 9e-16 seq43 98.7 9e-16 seq4136 96.9 3e-15 >seq979 Length=283929 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | | ||||| || || |||||||| || || |||||| ||| ||| Sbjct 158090 ACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAATCTGCCAGGGTACGGCCATCCTCG 158031 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || |||||||| | | | || || | ||||| |||||||| || ||||| ||||| Sbjct 158030 AGTTGTTTACCAGCAAAAATCAGCCTTTGTTGGTCTGGAGGAATCCCTTCCTTATCTTGG 157971 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | || | ||||||| ||||| |||| || | || || Sbjct 157970 ATTTTAGCCTTTACGTTGTCAATGGTATCGGAGCTTTCCACCTCGAGAGTGATGGTCTTG 157911 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| ||||| | |||||||||||| Sbjct 157910 CCAGTCAAGGTTTTCACGAAAATCTGCAT 157882 >seq43 Length=356683 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 ||| ||||| || | | ||||||| |||||||| |||||||| || ||||| ||| Sbjct 119865 CAACACCAAGTGAAAGGTTGACTCCTTTTGAATATTGTAGTCTGCCAAAGTACGACCATC 119924 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 |||||||||||||| | |||| || | ||| || ||||| || || || |||||||| Sbjct 119925 CTCGAGCTGTTTACCAACAAAGATCAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTATC 119984 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 ||||||| || | | || | ||||| | ||| || |||| || | || Sbjct 119985 CTGAATTTTTGCCTTGACATTGTCAATGGTATCTGAGCTCTCAACCTCGAGGGTGATTGT 120044 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || || || || | |||||||||||| Sbjct 120045 CTTCCCTGTGAGGGTCTTAACAAAAATCTGCATG 120078 >seq4136 Length=93312 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | ||||||| ||||||||||||||||| | ||||||| || || Sbjct 35640 ACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGCAAGGGTACGCCCGTCCTCA 35699 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||||||||||| | | |||| || | ||| || |||||||| || ||||||||||| Sbjct 35700 AGCTGTTTACCAGCAAAGATGAGTCTCTGCTGGTCTGGAGGGATCCCTTCTTTATC 35755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476077901855400