Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq979 96.9 3e-15 seq43 93.3 4e-14 seq10884 89.7 5e-13 seq10374 87.8 2e-12 >seq979 Length=283929 Score = 96.9 bits (106), Expect = 3e-15 Identities = 171/246 (70%), Gaps = 5/246 (2%) Strand=Plus/Plus Query 25160 TTTCAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATC 25219 ||| || || ||| ||||| | || || ||||| || || || || | ||||| || Sbjct 157868 TTTTAACTATACAG-ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACCATCACTCTC 157926 Query 25220 GAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGT 25279 || || ||| | |||||| || || | ||||| ||||| ||||| || || Sbjct 157927 GAGGTGGAAAGCTCCGATACCATTGACAACGTAAAGGCTAAAATCCAAGATAAGGAAGGG 157986 Query 25280 ATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-- 25337 || || || || || ||||| || |||| | || ||||||||||| |||| | | Sbjct 157987 ATTCCTCCAGACCAACAAAGGCTGATTTTTGCTGGTAAACAACTCGAGGATGGCCGTACC 158046 Query 25338 ATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAG 25397 || || |||||||| || || || || |||||| ||||||| || | |||||||| | Sbjct 158047 CTGGCA--GATTACAACATCCAGAAGGAGTCCACCCTTCATTTGGTCCTCAGATTGAGGG 158104 Query 25398 GAGGAA 25403 |||||| Sbjct 158105 GAGGAA 158110 >seq43 Length=356683 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCA 25232 |||||| | ||||| || || | || || || | ||||| |||| || || ||| Sbjct 120078 CATGCAGATTTTTGTTAAGACCCTCACAGGGAAGACAATCACCCTCGAGGTTGAGAGCTC 120019 Query 25233 ACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | ||||| || || | || || ||||||| |||||||||||||| || || || | Sbjct 120018 A-GATACCATTGACAATGTCAAGGCAAAAATTCAGGATAAAGAGGGTATCCCACCAGACC 119960 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 |||| || || || | | || ||||| ||||| |||| | | | | | || |||| Sbjct 119959 AGCAGAGGCTGATCTTTGTTGGTAAACAGCTCGAGGATGGTCGTACTTTGGCAGACTACA 119900 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 |||||||||| || || ||| |||| || ||||| ||| Sbjct 119899 ATATTCAAAAGGAGTCAACCTTTCACTTGGTGTTGAGA 119862 >seq10884 Length=505 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCA 25232 |||||| | ||||| || || | || || || | ||||| | || ||||| ||| Sbjct 265 CATGCAGATTTTTGTCAAGACCCTCACGGGGAAGACAATCACCCTTGAGGTCGAGAGCTT 206 Query 25233 ACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | ||||| || || | || ||| ||||||| ||||| |||||||| || || || | Sbjct 205 A-GATACCATTGACAATGTCAAAGCAAAAATTCAGGATAAGGAGGGTATCCCACCAGACC 147 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 |||| || || || | || || || || ||||| |||| | | | | || |||| Sbjct 146 AGCAGAGGCTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGTACTTTGGCAGACTACA 87 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 |||||||||| || || ||| |||| || ||||| ||| Sbjct 86 ATATTCAAAAGGAGTCTACCCTTCACTTGGTGTTGAGA 49 >seq10374 Length=62593 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| || || || || | ||||| ||||||| ||| | Sbjct 57634 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACTATCACCCTCGAAGTGGAAAGCTCT 57693 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | ||||| || || || || || || || || || || ||| Sbjct 57694 GATACCATTGACAACGTAAAGGCCAAGATCCAAGACAAGGAAGGGATCCCTCCAGACCAG 57753 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 |||||||| |||| | || |||||||| || |||| | | || || ||||||| Sbjct 57754 CAAAGACTTATTTTTGCTGGTAAACAACTTGAGGATGGCCGTACCCTGGCA--GATTACA 57811 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 | || || || || ||||| ||||||| || | |||||||| ||||||| Sbjct 57812 ACATCCAGAAGGAGTCCACTCTTCATTTGGTCCTCAGATTGAGGGGAGGAA 57862 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || | ||||| || | || || | || || ||| | | Sbjct 57862 ATGCAAATCTTTGTTAAGACTCTCACCGGTAAGACCATTACTCTTGAGGTAGAAAGCTCC 57921 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || || || ||||| || || || || || || ||| Sbjct 57922 GACACCATTGACAACGTTAAGGCCAAGATCCAGGATAAGGAAGGGATCCCTCCGGACCAG 57981 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| || |||| || ||| |||||||||||||||| | | | | || ||||| Sbjct 57982 CAAAGGCTGATTTTCGCCGGTAAACAACTCGAAGATGGCCGTACTTTGGCTGACTACAAC 58041 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| || || |||||| ||||||| || | || |||| ||||| Sbjct 58042 ATTCAGAAGGAGTCCACCCTTCATTTGGTCCTCAGGCTGAGGGGAGG 58088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444596367184800