Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq10374 82.4 6e-11 seq3534 82.4 6e-11 seq2537 82.4 6e-11 seq979 82.4 6e-11 >seq10374 Length=62593 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 106253 TTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGA 106312 |||| | ||||| ||||| || ||||| |||||||||||||| || ||| | ||| || Sbjct 57627 TTTACAGATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACTATCACCCTCGAAGTGGA 57686 Query 106313 ACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGT 106372 | | ||| | ||| | | || || || || ||||| ||||| | || Sbjct 57687 AAGCTCTGATACCATTGACAACGTAAAGGCCAAGATCCAAGACAAGGAAGGGATCCCTCC 57746 Query 106373 TGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGA 106432 || || ||||| ||||||| ||| || |||||| | || ||| || ||| || Sbjct 57747 AGACCAGCAAAGACTTATTTTTGCTGGTAAACAACTTGAGGATGGCCGTACCCTGGCAGA 57806 Query 106433 TTACAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 ||||||||| || || || || || || ||||| || | || || | |||||| Sbjct 57807 TTACAACATCCAGAAGGAGTCCACTCTTCATTTGGTCCTCAGATTGAGGGGAGGA 57861 >seq3534 Length=113076 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 ||||||||||| | || ||| || || |||||||| | ||| || |||||||| ||| Sbjct 92646 GACAAAGAAGGTATACCTCCTGACCAGCAGAGGCTTATATTTGCTGGTAAACAATTGGAA 92705 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| || ||| |||||||| || ||||| ||||| ||||| || | || ||| Sbjct 92706 GATGGACGGACCTTGGCAGATTACAATATCCAAAAGGAATCAACACTTCACCTCGTTTTG 92765 Query 106473 AGGTTACGAGGAGGA 106487 ||| | |||||||| Sbjct 92766 AGGCTTAGAGGAGGA 92780 >seq2537 Length=190147 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 ||||||||||| | || |||||| || |||||||| | ||| || |||||||| ||| Sbjct 144241 GACAAAGAAGGTATACCTCCTGATCAGCAGAGGCTTATATTTGCTGGTAAACAATTGGAA 144300 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| || | | |||||||| || ||||| ||||| ||||| ||| | || ||| Sbjct 144301 GATGGCCGGACCTTAGCAGATTACAATATCCAAAAGGAATCAACACTTCATCTTGTTTTG 144360 Query 106473 AGGTTACGAGGAGGA 106487 ||| | | |||||| Sbjct 144361 AGGCTCAGGGGAGGA 144375 >seq979 Length=283929 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| || ||||| ||||||||||||||||| || | || ||| | | Sbjct 157882 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACCATCACTCTCGAGGTGGAAAGCTCC 157941 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | | || || ||||| || || ||||| | || || ||| Sbjct 157942 GATACCATTGACAACGTAAAGGCTAAAATCCAAGATAAGGAAGGGATTCCTCCAGACCAA 158001 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 |||||||| |||| ||| || |||||| | || ||| || ||| ||||||||| Sbjct 158002 CAAAGGCTGATTTTTGCTGGTAAACAACTCGAGGATGGCCGTACCCTGGCAGATTACAAC 158061 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || || || || || || || ||||| || | || || | |||||| Sbjct 158062 ATCCAGAAGGAGTCCACCCTTCATTTGGTCCTCAGATTGAGGGGAGGA 158109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 401890672865120