Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq341 208 1e-47 seq3095 197 2e-44 seq58707 127 3e-23 seq86400 107 3e-17 >seq341 Length=228855 Score = 208 bits (230), Expect = 1e-47 Identities = 352/502 (70%), Gaps = 16/502 (3%) Strand=Plus/Minus Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || |||||||||||| | |||| | |||||||| |||||||| || || |||||||| | Sbjct 3322 ATTTGGGAAATGTACAAGAAAG-CAGAGGCCTCGTTTTGGACGGCGGAAGAGGTCGATTT 3264 Query 1455836 CGGCGCCG---ACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892 | | | | | || | ||||||| |||| || |||||| |||||||| || Sbjct 3263 -GTCCCAGGATATACAG--CACTGGGAAAAACTGACTGAGGACGAGAAGCATTTCATTAA 3207 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 |||| | || |||||||| ||||||| || |||||||| |||||||| || || Sbjct 3206 GCACATTCTTGCCTTTTT-CGCCGCCTCAGACGGCATCGTTTTGGAGAACCTCGCTGGAA 3148 Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012 | || ||||| ||||| ||| | | ||||| ||| |||||| |||||||| ||||| | Sbjct 3147 GGTTCATGAAGGAGGTTCAAATCTCGGAGGCTCGTGCGTTTTATGGGTTCCAAATCGCGA 3088 Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072 | || || ||||| ||||| | ||| || || | || | || ||||||| ||| Sbjct 3087 TTGAGAATATCCATTCTGAGATGTACAGTCTTCTTCTTGAATCTTATATCAAGGATTCGG 3028 Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 |||||| | || || | ||| ||||| || || || | ||| ||| |||||| Sbjct 3027 AGGAGAAGAATAGGCTTTTCCACGCAATCGAGACCGTTCCTTGTGTGGAGAAGAAGGCCA 2968 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGA-CACTTTGCCGAGCGGCTCGTCG 1456191 | ||||| | |||||| || ||| || |||||| ||||| | ||| Sbjct 2967 AGTGGGCCCTCCGCTGGATC------GATGGCTCAGAGTCCTTTGCTGAGCGTATACTCG 2914 Query 1456192 GCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 ||| || |||| || || || || |||||||| || |||||||| || |||||||| | Sbjct 2913 CCTTCGCTTGCGTTGAAGGGATTTTCTTCTCGGGAAGCTTCTGCGCAATATTTTGGCTAA 2854 Query 1456251 AGAAGCGCGGCCTCATGCCCGG 1456272 ||||||| || | ||||| || Sbjct 2853 AGAAGCGAGGATTAATGCCTGG 2832 >seq3095 Length=123113 Score = 197 bits (218), Expect = 2e-44 Identities = 361/523 (69%), Gaps = 12/523 (2%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | || | | || |||||||||||| || ||||| |||||||| ||| Sbjct 111012 TGTTCCCAATTCAATATCCCCAAATTTGGGAAATGTAC-AAGAAGGCAGAGGCCTCGTTT 111070 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC--ACGGTCCACTGGGTGTCGCTGAGCG 1455870 ||||| || || ||||| || | | || || | ||||||| ||| || Sbjct 111071 TGGACGGCGGAAGAGGTTGATTTGTCCCAGGATGTACAG--CACTGGGATAAATTGACCG 111128 Query 1455871 ACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATC 1455930 | || ||| |||||||| ||||| || || ||||||||| |||||| ||| ||||| Sbjct 111129 AGGATGAGAAGCATTTCATTAAGCATGTTCTTGCCTTTTTT-GCCGCCTCCGACGGCATT 111187 Query 1455931 GTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTG 1455990 || ||||| || || || | || ||||||||||| ||| | | ||||| ||| Sbjct 111188 GTTTTGGAGAATCTAGCTGGGAGGTTCATGAAAGAGGTTCAAATCTCGGAGGCGCGTGCT 111247 Query 1455991 TTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATC 1456050 ||||| |||||||||||||| || || || ||||| || || | ||| || || | Sbjct 111248 TTTTATGGGTTCCAGATCGCGATTGAGAATATCCATTCCGAGATGTACAGTCTTCTTCTT 111307 Query 1456051 GACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTG 1456110 || |||| | ||||| ||| |||||| | | || || | ||| ||||| || || Sbjct 111308 GAGTCCTATATAAAGGATTCGGAGGAGAAGAATCGGCTTTTCCACGCAATCGAGACCGTT 111367 Query 1456111 CCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGAC 1456170 || | || |||| |||||| | ||||| | ||||| || || | | Sbjct 111368 CCTTGTGTTGGGAAGAAGGCCAAGTGGGCCCTCCGCTGGATTGAC-----GGCTCAGAAT 111422 Query 1456171 ACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTT 1456229 ||| || ||||| | ||| |||||| ||||||| || || || |||||||| || | Sbjct 111423 CCTTCGCTGAGCGCATACTCGCCTTTGCTTGCGTCGAAGGGATTTTCTTCTCGGGAAGCT 111482 Query 1456230 TCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||||||| || |||||||| || ||||| || | ||||| || Sbjct 111483 TCTGCGCGATATTTTGGCTAAAAAAGCGTGGATTAATGCCTGG 111525 >seq58707 Length=1165 Score = 127 bits (140), Expect = 3e-23 Identities = 326/489 (67%), Gaps = 13/489 (3%) Strand=Plus/Minus Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCC-TTTTGGACCGCCGAGGAGGTCGACC 1455834 || ||| |||||||| | |||| | ||| |||| ||||||| || || |||||||| Sbjct 942 ATTTGGAAAATGTACAAGAAAG-CAGAGACCTCAGTTTTGGAGAGCGGAAGAGGTCGATT 884 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 | | || | ||||||| ||| ||| |||||| |||||||| |||| Sbjct 883 TGTCCCAGGATATATAGCACTGGGAAAATTTGATCGAGGACGAGAAGCATTTCATTAAGC 824 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 |||| || | | |||||||||||| || | ||||| |||||||| ||| | | Sbjct 823 ACGTTCTTGTCCTTTTTCGCCGCCTCAGACGATATCGTTTTGGAGAACCTCGCCAGAAGA 764 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 |||||||| ||||| ||| | | ||||| ||| |||||| |||||||| ||||| || Sbjct 763 TTTATGAAGGAGGTTCAAATCTCGGAGGCTCGTGCGTTTTATGGGTTCCAAATCGCGATT 704 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || || ||||| || || | | | || ||| | || | || ||||||| || Sbjct 703 GAGAATATCCATTCCGAGATGTTCAGTCTTCTGCTTGAATCTTATATCAAGGATTCGAAG 644 Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAA--AAGGCCG 1456132 ||||| | || || | | | ||||| || || || | ||| ||||| |||||| Sbjct 643 GAGAAAAATAGGCTTTTCCACACAATCGAGACCGTTCCTT--GTGTGGAAAAGAAGGCCA 586 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGG 1456192 | ||||| | |||||| || || | | ||| || |||| | | | Sbjct 585 AGTGGGCCCT-CGCTGGATCGAC-----GGCTCAGAATCCTTAGCTAAGCGTATACTTGC 532 Query 1456193 CTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAA 1456251 ||| || |||| || || || || ||||| | || |||||| | || |||||||| || Sbjct 531 CTTCGCTTGCGTTGAAGGGATTTTCTTCTCAAGAAGCTTCTGCACAATATTTTGGCTAAA 472 Query 1456252 GAAGCGCGG 1456260 ||||| || Sbjct 471 AAAGCGAGG 463 >seq86400 Length=1483 Score = 107 bits (118), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||| |||||||| | |||| | ||| |||| ||||||| || || |||||||| | Sbjct 1254 ATTTGGAAAATGTACAAGAAAG-CAGAGACCTCATTTTGGAGAGCGGAAGAGGTCGATTT 1312 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 | || | ||||||| ||| ||| |||||| |||||||| ||||| Sbjct 1313 GTCCCAGGATATATAGCACTGGGAAAATTTGATCGAGGACGAGAAGCATTTCATTAAGCA 1372 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 ||| || | | |||||||||||| || | ||||| |||||||| ||| | | | Sbjct 1373 CGTTCTTGTCCTTTTTCGCCGCCTCAGACGATATCGTTTTGGAGAACCTCGCCAGAAGAT 1432 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCA 1456004 ||||||| ||||| ||| | | ||||| ||| |||||| |||||||| Sbjct 1433 TTATGAAGGAGGTTCAAATCTCGGAGGCTCGTGCGTTTTATGGGTTCCA 1481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7169177313721430