Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3095 235 8e-57 seq341 183 4e-41 seq1602 138 2e-27 seq6003 127 3e-24 seq1847 127 3e-24 seq6036 86.0 9e-12 >seq3095 Length=123113 Score = 235 bits (260), Expect = 8e-57 Identities = 606/911 (67%), Gaps = 18/911 (2%) Strand=Plus/Minus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAA--TGATATAT 39383 || |||||||||||||| | ||||| || ||||| ||||| || | || |||| || Sbjct 111876 TTCTGGTATTCACCAACCCTCTTCTCAAAGAAATTTGTTTTCCCCTGTAAACTGATCAAT 111817 Query 39384 TTTCCATGAAATCAAACGGATTAGTTG--CATTATAtttttttttAAATCCTAATTCTGA 39441 | |||| ||||||| || || ||| |||| ||| ||| | |||| | | | Sbjct 111816 T--CCATCCAATCAAATGGGTT--TTGAACATTGTATAATTTGCTGTATCCAAGTGCATT 111761 Query 39442 AATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTAT 39501 | || |||||| || |||||||| |||||| |||||| |||| ||||||||| | Sbjct 111760 CAGCAGTCTATCGGCTACAAATTCAATGTATTGACTCATCAGATCACCATTCATTCCGAC 111701 Query 39502 GAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTAT 39561 || | || ||||| || | ||| || | ||||| || || || || | | Sbjct 111700 CAGGGCACAAGGAAGAGCATCGCAGACAAATTCCCTCTCGATATCCACCGCGTCAGCAAC 111641 Query 39562 TA-TCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGG 39620 | || | | ||| || || || || | | | | | | | | ||| | Sbjct 111640 AAGTCCCT-TGACTCGATCCTCGCTGAGTTTCATCCTCAGAAGGCTGTAGAGCAGGCAAG 111582 Query 39621 CGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAG 39680 | || ||||| |||| |||||||||| ||||| ||||| ||||| || | ||||| Sbjct 111581 CAAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAAAAAGTTAATCCAG 111522 Query 39681 GCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATG 39739 |||||| ||||||||||| ||||||||||| || ||| ||| | || || ||||| || Sbjct 111521 GCATTAATCCACGCTTTTTTAGCCAAAATATCGC-GCAGAAGCTTCCCGAGAAGAAAATC 111463 Query 39740 CCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACT-TGTATCATTATGTATC 39796 ||||| || ||||| || | | | ||| || | | | || | | | ||| Sbjct 111462 CCTTCGACGCAAGCAAAGGCGAGTATGCGCTCAGCGAAGGATTCTGAGCCGTCA---ATC 111406 Query 39797 CACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 39856 || | ||||| | || |||||| |||||||| | || || || || | || Sbjct 111405 CAGCGGAGGGCCCACTTGGCCTTCTTCCCAACACAAGGAACGGTCTCGATTGCGTGGAAA 111346 Query 39857 AGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCT 39916 || || || || || ||| || | ||| | || | | ||||| ||||| || Sbjct 111345 AGCCGATTCTTCTCCTCCGAATCCTTTATATAGGACTCAAGAAGAAGACTGTACATCTCG 111286 Query 39917 GAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGT 39976 |||||||| || |||||||| ||||| || || |||||| | || || | ||||| Sbjct 111285 GAATGGATATTCTCAATCGCGATCTGGAACCCATAAAAAGCACGCGCCTCCGAGATTTGA 111226 Query 39977 ACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAA 40036 |||||| || || | || | ||| || || || || || ||||||||| Sbjct 111225 ACCTCTTTCATGAACCTCCCAGCTAGATTCTCCAAAACAATGCCGTCGGAGGCGGCAAAA 111166 Query 40037 AATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTG 40096 || || | ||||| ||||| |||| || ||||| |||||||||| ||||| | Sbjct 111165 AAGGCAAGAACATGCTTAATGAAATGCTTCTCATCCTCGGTCAATTTATCCCAGTGCTGT 111106 Query 40097 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTAC 40156 | ||| | || | ||| || ||||| || ||||||||||| ||||||||||| |||||| Sbjct 111105 ACATCCTGGGACAAATCAACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCCTTCTTGTAC 111046 Query 40157 ATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTTGCA 40216 || | ||| || | ||||||| ||||| || || || | || || |||| | Sbjct 111045 ATTTCCCAAATTTGGGGATATTGAATTGGGAACATGCAGAACCGATCTGTATTTGGGGTG 110986 Query 40217 AGGATGGGTTC 40227 ||||||||||| Sbjct 110985 AGGATGGGTTC 110975 >seq341 Length=228855 Score = 183 bits (202), Expect = 4e-41 Identities = 570/874 (65%), Gaps = 14/874 (2%) Strand=Plus/Plus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAA--TGATATA 39382 ||| |||||||||||||| | ||||| || ||||| ||||| || | ||| |||| | Sbjct 2480 TTTCTGGTATTCACCAACCCTCTTCTCAAAGAAATTCGTTTTCCCCTGCAAACTGATCAA 2539 Query 39383 TTTTCCATGAAATCAAACGGATTAGTTGCA--TTATAtttttttttAAATCCTAATTCTG 39440 || |||| ||||||| || || ||||| || ||| ||| | | || | ||| Sbjct 2540 TT--CCATCCAATCAAATGGGTT--TTGCACATTGTATAATTTGCTGTACCCAAGTTCAT 2595 Query 39441 AAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTA 39500 | || || ||| || || ||||| ||||| |||||| |||| ||||| || | Sbjct 2596 TCAACAGTCGATCAGCTACGAATTCAATGTACTGACTCATCAGATCACCGTTCATCCCAA 2655 Query 39501 TGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTA 39560 || | || || || || | ||| || | || || |||||||| || | | Sbjct 2656 CCAGGGCACAAGGAAGGGCTTCGCAAACAAATTCCCTCTCAATTTCTACGGCATCAGCAA 2715 Query 39561 TTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGG 39620 | ||| | ||| || |||||| || | | | | | | ||||| | Sbjct 2716 TAATCCCCTTGACTCGATCCTCACTCAGTTTCATCCTCAGCAGGCTGTAGAGCAAGCACG 2775 Query 39621 CGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAG 39680 | || ||||| |||| ||||||||||| | || || ||||| || || || | ||||| Sbjct 2776 CAAAATCACAGTGTAAGCCCTCATCTCGAGAGATCAACTCGTTCGAGAAAGTTAATCCAG 2835 Query 39681 GCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATG 39739 |||||| || ||||| || ||||||||||| || ||| ||| | || || ||||| || Sbjct 2836 GCATTAATCCTCGCTTCTTTAGCCAAAATATTGC-GCAGAAGCTTCCCGAGAAGAAAATC 2894 Query 39740 CCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTGTATCATTATGTATCC 39797 ||||| || || || || | | | ||| | | ||| | | || |||| Sbjct 2895 CCTTCAACGCAAGCGAAGGCGAGTATACGCTCAGCAAAGGACTCTGAGCC--ATCGATCC 2952 Query 39798 ACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 39857 | | ||||| | || ||||||| |||||||| | || || || || | || | Sbjct 2953 AGCGGAGGGCCCACTTGGCCTTCTTCTCCACACAAGGAACGGTCTCGATTGCGTGGAAAA 3012 Query 39858 GATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTG 39917 | || || || || ||| || | ||| | || | | ||||| ||||| || | Sbjct 3013 GCCTATTCTTCTCCTCCGAATCCTTGATATAAGATTCAAGAAGAAGACTGTACATCTCAG 3072 Query 39918 AATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTA 39977 ||||||| || |||||||| || || || || ||||| | || || | ||||| | Sbjct 3073 AATGGATATTCTCAATCGCGATTTGGAACCCATAAAACGCACGAGCCTCCGAGATTTGAA 3132 Query 39978 CCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAA 40037 |||| || ||| | || | || || || || || || ||||| |||| Sbjct 3133 CCTCCTTCATGAACCTTCCAGCGAGGTTCTCCAAAACGATGCCGTCTGAGGCGGCGAAAA 3192 Query 40038 ATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGA 40097 | || | | || ||||| |||| || || || |||| ||| | ||||| | | Sbjct 3193 AGGCAAGAATGTGCTTAATGAAATGCTTCTCGTCCTCAGTCAGTTTTTCCCAGTGCTGTA 3252 Query 40098 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACA 40157 |||| | || | ||| || ||||| || ||||||||||| |||||||| || ||||||| Sbjct 3253 TATCCTGGGACAAATCGACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCTTTCTTGTACA 3312 Query 40158 TGTTCCATATATCACGATATTGTATTGGAAAAAT 40191 | | ||| || | |||| || |||||||| || Sbjct 3313 TTTCCCAAATTTTGGGATACTGAATTGGAAACAT 3346 >seq1602 Length=196056 Score = 138 bits (152), Expect = 2e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || |||||||| | |||| || || | ||| | ||||||||||| |||| ||||||| Sbjct 115645 CCCCCCTGATCCACATATCGAGCTGTATCATTGAACACTCTCAGCATTGGAACAATACCA 115704 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || || | |||||||||||| |||||||||||| |||| || || ||| | ||| Sbjct 115705 TTGGAGGTCCCATTTGTTCCACGAATATAACTTCCAGTTGCACGGATGTTATGCACAGAG 115764 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| |||||||| || ||| ||| | |||||| |||| ||| |||||||| Sbjct 115765 ACACCAATTCCTCCGGCTGATTTGCTGATGACAGCACACTCCTTCAGTGTATCATATATG 115824 Query 69931 CCCTCTATGCTATCATCTATCATG 69954 ||||| |||||||| ||| ||||| Sbjct 115825 CCCTCAATGCTATCCTCTTTCATG 115848 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| |||||||| | |||||||||||| ||||| |||||| | ||| | |||| | Sbjct 116011 GTTCCAGCATTAAAAAGTGTAGGAGATGCATGAGTAAACCATCGCTGAGATAAGAGATGG 116070 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| |||| | || || ||||| || ||| || || | | || | ||||||| Sbjct 116071 TATGTTTTAATAACAGAATCGATATCATCCTTATGGATCCCAACAGAAACCCTCATCAAC 116130 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || ||||| | || || || | || || || | || || | || || Sbjct 116131 ATGTGTTGAGGCCTCTCCACAACCTTCCCTTGGATCTTTAAGAAATAAGACCTCTCAAGG 116190 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 |||||||| ||||| || | || ||||||||| || || || || Sbjct 116191 GTTTTAAAACCAAAGTAATCATACTCAAAGTCTCTGTCATATATGAT 116237 >seq6003 Length=93342 Score = 127 bits (140), Expect = 3e-24 Identities = 163/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||||||||| | |||| || |||| ||| | |||| |||||| |||| ||| ||| Sbjct 80735 CCTCCCTGATCAACATATCGAGCTGTGTCATTGAACACTCGCAGCATTGGAACAATGCCA 80794 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| |||||||||||| ||| |||||||| | || || || ||| || ||| Sbjct 80795 TTGGATGCCCCATTTGTTCCACGAATGTAACTTCCAGTAGCACGGATGTTATGAACAGAG 80854 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| ||||| || || ||| ||| | |||||| ||||| || ||||| || Sbjct 80855 ACACCAATTCCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAGAGTATCATAAATG 80914 Query 69931 CCCTCTATGCTATCATCTATCATG-TTAAGAAGAAAACAGCT 69971 ||||| |||||||| ||| ||||| || ||| |||||||| Sbjct 80915 CCCTCAATGCTATCTTCTTTCATGCATATCAAG-AAACAGCT 80955 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| |||||||| | |||||||||||| || || |||||| | ||| | |||| Sbjct 81095 GTTCCAGCATTAAAAAGTGTAGGAGATGCATGTGTAAACCATCGCTGAGACAATAGATGA 81154 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| ||||||| |||||||| || || || || | | || | ||||||| Sbjct 81155 TATGTTTTGATAGCTGCATCTATATCATCCTTGTGGATCCCAACAGAAACCCTCATCAAC 81214 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || ||||| | ||| || || | || || || || || ||| | || ||| Sbjct 81215 ATGTGTTGAGGCCTTTCAACAACCTTCCCTCTGATCTTTAAGAGATACGATCTCTCAAGA 81274 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 |||||||| ||||| | | || ||||||||| || || || || Sbjct 81275 GTTTTAAAACCAAAGAAATCATAATCAAAGTCTCTGTCATATATGAT 81321 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 || ||| ||||||||||| || | || || || || |||||| |||| ||||||| Sbjct 80264 CTGTTTCTCATATTGTGTGTACAAAGTCTCAAACTC-TCACCCCAACAATCAGCCAATCC 80322 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 |||| ||||||||||| | ||||||||| ||| | | |||| | |||||| Sbjct 80323 AGGAGCCTCATTTGGACAAAACAATGACCA-TTGCCATTAGATTGGACTCTCTGCATAAA 80381 Query 69609 TAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGG 69646 || ||| || | ||||||||| ||| |||||||||| Sbjct 80382 TAAATCAGGCACCCAAAGAGCATAAAATAGATCTCTGG 80419 >seq1847 Length=115635 Score = 127 bits (140), Expect = 3e-24 Identities = 163/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||||||||| | |||| || |||| ||| | |||| |||||| |||| ||| ||| Sbjct 24547 CCTCCCTGATCAACATATCGAGCTGTGTCATTGAACACTCGCAGCATTGGAACAATGCCA 24606 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| |||||||||||| ||| |||||||| | || || || ||| || ||| Sbjct 24607 TTGGATGCCCCATTTGTTCCACGAATGTAACTTCCAGTAGCACGGATGTTATGAACAGAG 24666 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| ||||| || || ||| ||| | |||||| ||||| || ||||| || Sbjct 24667 ACACCAATTCCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAGAGTATCATAAATG 24726 Query 69931 CCCTCTATGCTATCATCTATCATG-TTAAGAAGAAAACAGCT 69971 ||||| |||||||| ||| ||||| || ||| |||||||| Sbjct 24727 CCCTCGATGCTATCTTCTTTCATGCATATCAAG-AAACAGCT 24767 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 || ||| ||||||||||| || | || || || || |||||| |||| ||||||| Sbjct 24074 CTGTTTCTCATATTGTGTGTACAAAGTCTCAAACTCTTCACCCCAACAATCAGCCAATCC 24133 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 |||| ||||||||||| | ||||||||| ||| | | |||| | |||||| Sbjct 24134 AGGAGCCTCATTTGGACAAAACAATGACCATTGCCCATTAGATTGGACTCTCTGCATAAA 24193 Query 69609 TAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGG 69646 || ||| || | ||||||||| ||| |||||||||| Sbjct 24194 TAAATCAGGCACCCAAAGAGCATAAAATAGATCTCTGG 24231 >seq6036 Length=74774 Score = 86.0 bits (94), Expect = 9e-12 Identities = 84/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || ||||||||||| || ||||||||||| ||| | |||||| || ||||| | Sbjct 63486 GCAAGCAAAGTCACAATGAAGTCCCTCATCTCTCGAAATAAGTTCGTTTGAGAATGTCAA 63545 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG 39722 || ||||| | || ||||| || ||||||||||| ||| |||||| Sbjct 63546 GCCTGGCATCATTCCCCGCTTCTTTAGCCAAAATATTGCA-CAAAAG 63591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686140191984600