Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3095 203 3e-47 seq341 179 3e-40 seq86400 82.4 6e-11 >seq3095 Length=123113 Score = 203 bits (224), Expect = 3e-47 Identities = 399/584 (68%), Gaps = 12/584 (2%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||||||||||| | || ||| |||||||||| || ||| |||| || |||| Sbjct 111012 TGTTCCCAATTCAATATCCCCAAATTTGGGAAATGTACAAGAAGGCAGAGGCCTCGTTTT 111071 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCAC 43826 |||| || ||||| ||||||||| | | || || || ||| | ||| | Sbjct 111072 GGACGGCGGAAGAGGTTGATTTGTCCCAGGATGTACAGCACTGGGATAAATTGACCGAGG 111131 Query 43827 AAGAAAAACATTTTAT--ATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGT 43884 | || || ||||| || | | | ||| | || |||||||| || |||||| || || Sbjct 111132 ATGAGAAGCATTTCATTAAGCAT--GTTCTTGCCTTTTTTGCCGCCTCCGACGGCATTGT 111189 Query 43885 CAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTT 43944 || ||| | | | | |||| | |||| |||||| | | || || || ||| Sbjct 111190 TTTGGAGAATCTAGCTGGGAGGTTCATGAAAGAGGTTCAAATCTCGGAGGCGCGTGCTTT 111249 Query 43945 TTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGA 44004 ||||||||| || || || || || ||||| ||||| || |||||||||||||| | || Sbjct 111250 TTATGGGTTCCAGATCGCGATTGAGAATATCCATTCCGAGATGTACAGTCTTCTTCTTGA 111309 Query 44005 TACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC 44064 | || || || ||| | | |||||| |||| | || | || || || || || || Sbjct 111310 GTCCTATATAAAGGATTCGGAGGAGAAGAATCGGCTTTTCCACGCAATCGAGACCGTTCC 111369 Query 44065 TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAAT---TCAAATGATTCTTT 44121 | || | || || | |||||||| ||||| | ||| || || || Sbjct 111370 TTGTGTTGGGAAGAAGGCCAAGTGGGCCCTCCGCTGGATTGACGGCTCA---GAATCCTT 111426 Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TG 44180 | || || | |||| ||||| || ||||| |||||||| || ||| || || Sbjct 111427 CGCTGAGCGCATACTCGCCTTTGCTTGCGTCGAAGGGATTTTCTTCTCGGGAAGCTTCTG 111486 Query 44181 CGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGT 44240 || | ||||||||| |||| || || || || |||||||| || || |||||||| |||| Sbjct 111487 CG-CGATATTTTGGCTAAAAAAGCGTGGATTAATGCCTGGATTAACTTTTTCAAACGAGT 111545 Query 44241 TAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 |||| || ||||| || ||||| || |||||||||||| || Sbjct 111546 TAATCTCGCGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTG 111589 >seq341 Length=228855 Score = 179 bits (198), Expect = 3e-40 Identities = 398/590 (67%), Gaps = 24/590 (4%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 ||||||||||||| |||| | || ||| |||||||||| |||||| |||| || |||| Sbjct 3345 TGTTTCCAATTCAGTATCCCAAAATTTGGGAAATGTACAAGAAAGCAGAGGCCTCGTTTT 3286 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTA--GCACATTGGATTGCATTAAAACC 43824 |||| || ||||| || |||||| | | || || |||| | ||| ||||| Sbjct 3285 GGACGGCGGAAGAGGTCGATTTGTCCCAGGATATACAGCAC-TGGGA-------AAAACT 3234 Query 43825 -AC-----AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGG 43878 || | || || ||||| || || | || ||||| || || ||||| Sbjct 3233 GACTGAGGACGAGAAGCATTTCATTAAGCACATTCTTGCCTTTTTCGCCGCCTCAGACGG 3174 Query 43879 GATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACG 43938 || || || || | | | | |||| | | || |||||| | | || || || Sbjct 3173 CATCGTTTTGGAGAACCTCGCTGGAAGGTTCATGAAGGAGGTTCAAATCTCGGAGGCTCG 3114 Query 43939 ATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCT 43998 ||||||||||| ||||| || || || ||||| ||||| || |||||||||||||| Sbjct 3113 TGCGTTTTATGGGTTCCAAATCGCGATTGAGAATATCCATTCTGAGATGTACAGTCTTCT 3054 Query 43999 GATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAAC 44058 | || | || ||||| ||| | | |||||| || | | || | || || || || Sbjct 3053 TCTTGAATCTTATATCAAGGATTCGGAGGAGAAGAATAGGCTTTTCCACGCAATCGAGAC 2994 Query 44059 AGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAAT---TCAAATGA 44115 || ||| | | | || || | |||||||| ||||| || ||| || Sbjct 2993 CGTTCCTTGTGTGGAGAAGAAGGCCAAGTGGGCCCTCCGCTGGATCGATGGCTCA---GA 2937 Query 44116 TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-AT 44174 || |||| || || | |||| || || || ||||| |||||||| || || | Sbjct 2936 GTCCTTTGCTGAGCGTATACTCGCCTTCGCTTGCGTTGAAGGGATTTTCTTCTCGGGAAG 2877 Query 44175 CGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAA 44234 | | ||| || ||||||||| ||||||| ||||| || |||||||| || || || || | Sbjct 2876 CTTCTGC-GCAATATTTTGGCTAAAGAAGCGAGGATTAATGCCTGGATTAACTTTCTCGA 2818 Query 44235 ATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 | ||||| || ||| ||||| |||||||| || |||||||| |||||| Sbjct 2817 ACGAGTTGATCTCTCGAGATGAGGGCTTACACTGTGATTTTGCGTGCTTG 2768 >seq86400 Length=1483 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 ||||||||||||| |||| | || ||| |||||||||| |||||| || | ||||||| Sbjct 1231 TGTTTCCAATTCAGTATCCCAAAATTTGGAAAATGTACAAGAAAGCAGAGACCTCATTTT 1290 Query 43767 GGACAGCAGAAGAAGTTGATTTG 43789 ||| ||| ||||| || |||||| Sbjct 1291 GGAGAGCGGAAGAGGTCGATTTG 1313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397022389787575