Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq689 113 4e-20 seq10374 107 2e-18 seq2414 107 2e-18 seq3688 100 2e-16 seq2660 95.1 1e-14 seq7954 93.3 4e-14 seq4972 93.3 4e-14 seq1123 93.3 4e-14 seq32692 86.0 5e-12 seq4136 86.0 5e-12 seq203 84.2 2e-11 >seq689 Length=155235 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || |||||||||||| | | || ||||||| |||||||| ||| Sbjct 95872 GTAGATTCCTTCTGGATATTGTAGTCGGCGAGTGTACGACCGTCTTCAAGCTGTTTCCCG 95931 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || |||||||| || |||||||| | ||||| || || |||||| ||| Sbjct 95932 GCAAATATTAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTAGCTTTG 95991 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | || ||| || || || ||||| | ||| ||||| || ||| Sbjct 95992 ACATTGTCAATGGTGTCGGAGGATTCCACCTCCAGGGTTATGGTTTTCCCCGTGAGGGTT 96051 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 96052 TTCACGAAGATCTGCAT 96068 >seq10374 Length=62593 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | || || | |||||||| | || || || || ||||| |||||||| Sbjct 58090 TGCCTCCCCTCAGCCTGAGGACCAAATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAG 58031 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | || | |||||||| |||||||||||| |||| || | || || ||||| | Sbjct 58030 CCAAAGTACGGCCATCTTCGAGTTGTTTACCGGCGAAAATCAGCCTTTGCTGGTCCGGAG 57971 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || ||||| ||||||| || | | | || | ||||| | | ||| | Sbjct 57970 GGATCCCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCAATGGTGTCGGAGCTTTCTA 57911 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || | || || || ||||| || |||||||||||||| Sbjct 57910 CCTCAAGAGTAATGGTCTTACCGGTGAGAGTCTTAACAAAGATTTGCAT 57862 >seq2414 Length=83374 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | | |||| |||| || |||||||| ||| Sbjct 34232 GTGGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGACCGTCCTCCAGCTGTTTTCCG 34173 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || |||||||| || || ||||| | || || ||||| ||||||| ||| Sbjct 34172 GCGAATATAAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 34113 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | || |||||| || | ||||| | || ||||| |||||| Sbjct 34112 ACATTGTCGATTGTGTCGGAGGATTCAACCTCCAAGGTTATGGTCTTCCCCGTTAGAGTT 34053 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 34052 TTCACGAAGATCTGCAT 34036 >seq3688 Length=93992 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || |||||||| ||||||||| | | | | |||| || | |||||| || Sbjct 93750 GTAGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTACCGTCCTCCAACTGTTTTCCT 93691 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| |||| || ||||| || |||||||| | ||||| || || ||||||| || Sbjct 93690 GCGAAAATAAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 93631 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | ||||| || ||||| || | || || || || ||| Sbjct 93630 ACATTATCGATTGTGTCGGAACTCTCAACCTCGAGAGTAATCGTCTTACCGGTTAGGGTT 93571 Query 27231 TTCACAAAGATTTGCATAGC 27250 ||||||||||| |||||||| Sbjct 93570 TTCACAAAGATCTGCATAGC 93551 >seq2660 Length=84674 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| |||| |||||||| || || Sbjct 258 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCA 317 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| || ||||| || | || || || || ||||||| ||| Sbjct 318 GCAAATATGAGACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTC 377 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | || || | || |||||| || | ||||| | || ||||| || ||| Sbjct 378 ACATTGTCGATGGTATCAGAGGATTCAACCTCCAAGGTTATTGTCTTCCCCGTTAGGGTT 437 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 438 TTCACGAAGATCTGCAT 454 >seq7954 Length=38498 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCA-TGTTGCGCTCGTCTTC 27097 ||||| || || || || || ||||| |||||||| || || |||| || | ||||| Sbjct 10148 ACCAAGTGCAATGTGGATTCCTTTTGGATATTGTAATCAGCCAGTGTT-CGTCCATCTTC 10206 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||||||| || || ||||||| | |||||| || || || | ||||| || || Sbjct 10207 GAGCTGTTTTCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGGATGCCCTCCTTGTCCTG 10266 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||| ||||| | || | ||||| | || || || | ||| || | ||| Sbjct 10267 AATCTTTGCTTTCACATTGTCAATTGTGTCGGAACTCTCCACCTCCAAAGTGATGGTTTT 10326 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || ||||| ||||||||||| Sbjct 10327 TCCGGTCAGGGTCTTCACGAAGATTTGCAT 10356 >seq4972 Length=58182 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 27045 TGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTG 27103 |||| ||||| || ||||| || |||||||| ||| ||| || |||| || | || Sbjct 8840 TGTAGAGTAGACTCCTTTTGGATGTTGTAGTCTGCTAGGGTTCTGC-CGTCCTCCAATTG 8898 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 ||| || ||| |||| || |||||||| || ||||| | ||||| || || |||||| Sbjct 8899 TTTTCCTGCGAAAATAAGCCGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCTTGGATCTT 8958 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 | || | | || | ||||| | ||||| || ||||| || | |||||||| Sbjct 8959 GGCCTTGACATTATCAATTGTGTCGGAACTCTCAACCTCGAGAGTAATTGTCTTGCCCGT 9018 Query 27224 CAGAGTTTTCACAAAGATTTGCATA 27248 ||||||||||| || | |||||| Sbjct 9019 TAGAGTTTTCACGAAAACCTGCATA 9043 >seq1123 Length=183110 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-G 27077 |||||||||| | || | |||||||| | || || || ||||| ||||| || | Sbjct 67885 TGCCTCCGCGTAGCCTTAGCACCAAATGAAGGGTGCTCTCCTTCTGAATGTTGTAATCTG 67826 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 | ||| || | ||||| ||||| || || || |||| | | |||||||||||| Sbjct 67825 CAAGGGTTCTGC-CATCTTCAAGCTGCTTGCCAGCAAAAATCAATCTCTGTTGATCCGGG 67767 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||||| ||||| ||||||| || | | || | ||||| | | ||| Sbjct 67766 GGAATTCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCAATCGTGTCAGAGCTCTCA 67707 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || | ||| || || |||||||| |||||||||||||| Sbjct 67706 ACCTCAAGGGTAATGGTTTTCCCAGTAAGAGTTTTGACAAAGATTTGCAT 67657 >seq32692 Length=500 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| ||||| |||||||| || || Sbjct 187 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGTCGTCCTCGAGCTGCTTTCCA 246 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| || ||| | || | || || || || ||||||| ||| Sbjct 247 GCAAATATGAGACGCTGCTGGTCCAGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTC 306 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | || || || |||||| || | ||||| | || ||||| || ||| Sbjct 307 ACATTGTCGATGGTATCAAAGGATTCAACCTCCAAGGTTATGGTCTTCCCCGTTAGTGTT 366 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| | ||| Sbjct 367 TTCACGAAGATCTACAT 383 >seq4136 Length=93312 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || | || ||| ||||| || | || || || ||||||||||| ||||| | Sbjct 34710 CCACCACGAAGCCTCAACACCAAGTGGAGAGTGGACTCCTTTTGAATATTATAGTCAGCC 34769 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | || || ||||||||||| ||| | || || | |||||| || || || Sbjct 34770 AAAGTACGGCCATCCTCAAGCTGTTTACCAGCGAAGATAAGCCTCTGTTGGTCTGGTGGG 34829 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||| || || | | || | ||||| | | |||||| Sbjct 34830 ATGCCCTCCTTGTCTTGGATTTTAGCCTTAACATTATCAATGGTGTCGGAGCTTTCAACC 34889 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||| ||| || || || || || ||||| |||||||| Sbjct 34890 TCAAGGGTAATAGTTTTCCCAGTAAGCGTCTTAACAAAAATTTGCAT 34936 Score = 86.0 bits (94), Expect = 5e-12 Identities = 166/243 (68%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | ||||| || | || || || |||||||| |||||||| Sbjct 35622 CCTCCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGCA 35681 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | ||| |||| || ||||||||||| || | ||||| | ||| || || || || Sbjct 35682 AGGGTACGCCCGTCCTCAAGCTGTTTACCAGCAAAGATGAGTCTCTGCTGGTCTGGAGGG 35741 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||||||| |||||| || | | || | ||||| | | ||| || Sbjct 35742 ATCCCTTCTTTATCTTGGATCTTAGCCTTTACATTATCGATGGTGTCGGAGCTTTCCACC 35801 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAAT 27260 || || || || | ||||| || || ||||| || ||||| ||||| |||| || || Sbjct 35802 TCAAGGGTGATGGTCTTGCCGGTTAGGGTTTTAACGAAGATCTGCAT--CTGC--AAGAT 35857 Query 27261 TTA 27263 ||| Sbjct 35858 TTA 35860 >seq203 Length=254899 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || ||||| || |||||||| ||| ||| || |||| || || |||||||| Sbjct 80441 GTGGACTCCTTTTGGATGTTGTAGTCCGCTAGTGTCCGGC-CGTCCTCTAGTTGTTTACC 80499 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | || | ||| ||||| ||||| || | || || ||||| ||||| ||| Sbjct 80500 GGCAAAGATTAAACGTTGTTGGTCCGGAGGGATTCCTTCCTTATCCTGAATCTTAGCTTT 80559 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||||| || || || |||||||| | ||||| || || || Sbjct 80560 AACATTATCAATTGTGTCTGAACTCTCGACCTCGAGAGTTATGGTCTTGCCAGTAAGGGT 80619 Query 27230 TTTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 80620 CTTCACAAAGATCTGCAT 80637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424470811840680