Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3095 104 3e-17 seq83971 102 1e-16 seq1271 93.3 5e-14 >seq3095 Length=123113 Score = 104 bits (114), Expect = 3e-17 Identities = 341/522 (65%), Gaps = 15/522 (3%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | |||||||||||| || || | || ||||| || || || Sbjct 111582 GCAAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAAAAAGTTAATCCA 111523 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| | || ||||| || | |||| | || |||||||| || |||||||| || Sbjct 111522 GGCATTAATCCACGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAAATC 111463 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838 || || || || ||||| || | | ||| || |||||||| || | |||| | Sbjct 111462 CCTTCGACGCAAGCAAAGGCGAGTATGCGCTCAGCGAAGGATTCTGA---GCCGTCAATC 111406 Query 122839 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAAT 122898 || | ||||| || ||||||||| ||| ||| || || || | ||| || | || Sbjct 111405 CAGCGGAGGGCCCACTTGGCCTTCTTCCCAACACAAGGAACGGTCTCGATTGCGTGGAAA 111346 Query 122899 AACTGCTTCTTTTCAGATCC--ATCCTTAATGTATTTGTCA--ATCAATTTTGAATATGT 122954 | | | ||||| || ||| |||||| || || ||| | || || || | Sbjct 111345 AGCCGATTCTTCTC--CTCCGAATCCTTTATATAGGACTCAAGAAGAAGACTG--TACAT 111290 Query 122955 TTCGCCATGAACCATTTCATTATGGC-AT-TGATATGCGTAGAATGAGCGCGCTTCGCTT 123012 ||| ||| | | ||| || || || || | | || || | ||||| || Sbjct 111289 CTCGGAATGGATATTCTCA--ATCGCGATCTGGAACCCATAAAAAGCACGCGCCTCCGAG 111232 Query 123013 ATCTGAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCA 123072 || |||||||| | | || | | | |||||| |||||||| || ||||| | Sbjct 111231 ATTTGAACCTCTTTCATGAACCTCCCAGCTAGATTCTCCAAAACAATGCCGTCGGAGGCG 111172 Query 123073 GCAAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAG 123132 ||||| || || || | | ||| ||||| | ||| |||| || ||| | | |||| Sbjct 111171 GCAAAAAAGGCAAGAACATGCTTAATGAAATGCTTCTCATCCTCGGTCAATTTATCCCAG 111112 Query 123133 TCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCAA 123174 | | | ||| | |||||||||||| |||||||| |||||| Sbjct 111111 TGCTGTACATCCTGGGACAAATCAACCTCTTCCGCCGTCCAA 111070 >seq83971 Length=1406 Score = 102 bits (112), Expect = 1e-16 Identities = 193/278 (69%), Gaps = 7/278 (3%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||| || || | | |||||||| || || |||||||||||||| | | Sbjct 584 AACCCATCCATTTCAGTCAAGAGCTGATTAATGGTCTGCTCTCTCTCATCATTCCCA--C 641 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | | | || || | | |||| | ||||| |||||||||||||||||||| ||||| | Sbjct 642 CTCCAAGTCCCGCCCCTCTTTGCCTCCCCACTGCATCAATCTCATCAATGAACACAATGC 701 Query 11658 ATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 | || || ||| | ||| ||||||| | ||| | || ||| || |||||||| Sbjct 702 AAGG-TGCTTTCGACTTGGCCTTTTCAAACAAATC-CTCACTCTTGAAGCTCCCACACCC 759 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 || |||| |||||||| | || ||| | ||| | |||||| || | ||||| Sbjct 760 ACGAACAATTCCACAAACTCTGAGGCTGCACACGAAAAGAATGGCACCCCGGCCTCACCG 819 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || | || | ||| | ||||| || || ||||| || Sbjct 820 GCAACTGCCCTGGCCAAAAGGGTTTTCCCAGTACCAGG 857 >seq1271 Length=174858 Score = 93.3 bits (102), Expect = 5e-14 Identities = 228/340 (67%), Gaps = 17/340 (5%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | || ||||| |||||||| || | ||| ||||| | ||||| Sbjct 167742 TCAAGAATATCAGCACGGTTAGTTGCCGCAATTACAATAATACCAGTGTTCCCTTCAAAA 167801 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | || || | || ||||| || ||||||||| | | Sbjct 167802 CCATCCATTTCCGTCAA-AGCTGGTTCAGAGTCTGTTCCCTTTCATCATTTCC------A 167854 Query 11603 CCACCAGCACTGCGTTGCTT------GCCCACC-GCATCAATCTCATCAATGAAGACAAT 11655 |||||| | |||| || ||||| | |||||||| ||||| | || ||||| Sbjct 167855 CCACCAATTCC-CGTTCCTCTTTGACGCCCAACAGCATCAATTTCATCGACAAATACAAT 167913 Query 11656 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || ||| || ||| | | || ||||| || || | | |||||| ||||| Sbjct 167914 GCAGGGAGCATTCTCCTTGGCCTTCTTGAAAAGATCACGGACTCGTGAGGCACCAACACC 167973 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCAC 11774 |||||||||||| ||||| | | | || | || || ||||| ||| | ||| | Sbjct 167974 AACAAACATCTCAACAAACTCCGAACCTGA-TATTGAGAAAAATGGAACACCAGCTTCCC 168032 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | || || || ||| || | ||||||| |||||||| Sbjct 168033 CAGCAATTGCCTTGGCTAGCAACATCTTTCCAGTACCTGG 168072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627329271444000