Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq83971 98.7 1e-15 seq1602 93.3 5e-14 seq4336 87.8 2e-12 seq1271 87.8 2e-12 seq6003 82.4 9e-11 >seq83971 Length=1406 Score = 98.7 bits (108), Expect = 1e-15 Identities = 192/278 (69%), Gaps = 7/278 (3%) Strand=Plus/Plus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 || |||||||| ||||||||||| ||||| ||||| || || | ||||||||| || | Sbjct 584 AACCCATCCATTTCAGTCAAGAGCTGATTAATGGTCTGCTCTCTCTCATCATTCCCA--C 641 Query 14213 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270 | | | ||||| | | |||| | || || || ||||| ||||| ||||| || || | Sbjct 642 CTCCAAGTCCCGCCCCTCTTTGCCTCCCCACTGCATCAATCTCATCAATGAACACAATGC 701 Query 14271 ATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 | || || ||| || ||| |||||| | ||| | |||||| || || |||||| Sbjct 702 AAGG-TGCTTTCGACTTGGCCTTTTCAAACAAATC-CTCACTCTTGAAGCTCCCACACCC 759 Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCC 14389 || |||| |||||||| | | ||| | ||| | ||| || || | ||||| Sbjct 760 ACGAACAATTCCACAAACTCTGAGGCTGCACACGAAAAGAATGGCACCCCGGCCTCACCG 819 Query 14390 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || | || | ||| | ||||| ||||| || || || Sbjct 820 GCAACTGCCCTGGCCAAAAGGGTTTTCCCAGTACCAGG 857 >seq1602 Length=196056 Score = 93.3 bits (102), Expect = 5e-14 Identities = 75/88 (85%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 118181 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCT-GTGG 118239 ||||||||||| || |||||||||||||||||||| || ||||||| | |||| || | Sbjct 113413 ATAGATATTGGAGGTATATGGCTCAAAGCACTCATTATT-CCCAAGAATCTGGCTGGTTG 113471 Query 118240 AGGCTGTGGGCATGGGTGCCATGAGAAG 118267 |||| |||||||||||||| || ||||| Sbjct 113472 AGGCAGTGGGCATGGGTGCTATAAGAAG 113499 >seq4336 Length=101003 Score = 87.8 bits (96), Expect = 2e-12 Identities = 189/278 (68%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 || |||||||| ||||||||||| |||||||| || || || | ||||||||| || | Sbjct 652 AACCCATCCATTTCAGTCAAGAGCTGATTGATAGTCTGCTCTCTTTCATCATTACCA--C 595 Query 14213 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270 | | | || || | | ||| | || || || ||||| ||||| ||||| || || | Sbjct 594 CTCCAAGTCCTGCCCCTCTCTGCCTCCCAACAGCATCAATCTCATCAATGAACACAATGC 535 Query 14271 ATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 | || | |||| || || ||||| | ||||| |||||| || || || ||| Sbjct 534 AAGG-CGCTTTTGACTTTGCCTTCTCAAACAAATCTCTCACTCTTGAAGCTCCCACGCCC 476 Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCC 14389 ||||||| |||||||| | | ||| | ||| | ||| || || | ||||| Sbjct 475 ACAAACAATTCCACAAACTCTGAGGCTGCACACGAAAAGAATGGCACCCCGGCCTCACCG 416 Query 14390 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || | || | ||| | ||||| ||||| || || || Sbjct 415 GCAACTGCCCTGGCCAAAAGGGTTTTCCCAGTACCAGG 378 >seq1271 Length=174858 Score = 87.8 bits (96), Expect = 2e-12 Identities = 176/256 (69%), Gaps = 9/256 (4%) Strand=Plus/Plus Query 14095 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 14154 |||||| |||||| ||||| || ||||| || |||| || || || | ||||| Sbjct 167741 GTCAAGAATATCAGCACGGTTAGTTGCCGCAATTACAATAATACCAGTGTTCCCTTCAAA 167800 Query 14155 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCAT 14214 |||||||| || ||||| || || || | || ||||| | ||||||||| || Sbjct 167801 ACCATCCATTTCCGTCAA-AGCTGGTTCAGAGTCTGTTCCCTTTCATCATTTCCACC--- 167856 Query 14215 ACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 |||| |||| | | ||| || || || ||||||||||||| || || || || Sbjct 167857 ACCAATTCCCGTTCCTCTTTGACGCCCAACAGCATCAATTTCATCGACAAATACAATGCA 167916 Query 14272 TGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 || ||| | | || | ||| ||| | ||| || |||| |||||| ||||| | Sbjct 167917 GGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGGACTCGTGAGGCACCAACACCAA 167975 Query 14331 CAAACATCTCCACAAA 14346 |||||||||| ||||| Sbjct 167976 CAAACATCTCAACAAA 167991 >seq6003 Length=93342 Score = 82.4 bits (90), Expect = 9e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 118181 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 118240 ||||||||||| || || ||||||||||||||||| || |||| || ||| || || Sbjct 78806 ATAGATATTGGAAGTATAAGGCTCAAAGCACTCATTATTCCCCAGAATCTGGCTGGTCGA 78865 Query 118241 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTC 118300 ||||||||||| ||||| || ||||| || | | || |||| | || |||| Sbjct 78866 AGCTGTGGGCATAGGTGCTATAAGAAGTGAATTTCTAACTCCATTTTTCACTAT-CGTTT 78924 Query 118301 CT-TGAGAGCGTCCCAGTC 118318 || ||||||| ||||| || Sbjct 78925 CTCTGAGAGCATCCCAATC 78943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617743209663400