Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq341 120 4e-22 seq1271 113 5e-20 seq83971 98.7 1e-15 seq4336 84.2 3e-11 >seq341 Length=228855 Score = 120 bits (132), Expect = 4e-22 Identities = 521/813 (64%), Gaps = 21/813 (3%) Strand=Plus/Minus Query 94440 TTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGA 94499 |||||| || |||||||| ||| | || ||||| | | | ||| | | || | ||| Sbjct 3287 TTGGACGGCGGAAGAGGTCGATTTGTCCCAGGATATACAGCACTGGGAAAAACTGACTGA 3228 Query 94500 AAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGT 94559 | || ||| | ||||| || |||| || || || || || | || || || || || Sbjct 3227 GGACGAGAAGCATTTCATTAAGCACATTCTTGCCTTTTTCGCCGCCTCAGACGGCATCGT 3168 Query 94560 TTTTGAGAATATCAATAACAACTTTGCTGATG-AGGTGCAATCCTCTGAAGCGAGATCCT 94618 ||| ||||| || | || || ||| | |||| ||| ||| || || | | | Sbjct 3167 TTTGGAGAACCTCGCTGG-AAGGTTCATGAAGGAGGTTCAAATCTCGGAGGCTCGTGCGT 3109 Query 94619 TCTATGCGTATCAGTGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCATAG 94678 | |||| || || | ||| | | ||| |||| |||||| || | | Sbjct 3108 TTTATGGGTTCCAAATCGCGATTGAGAATATCCATTCTGAGATGTACAGTCTTCTTCTTG 3049 Query 94679 ACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTC 94738 | ||||| |||||| | |||||||| ||| || | || ||| | || |||| Sbjct 3048 AATCTTATATCAAGGATTCGGAGGAGAAGAATAGGCTTTTCCACGCAATCGAGACCGTTC 2989 Query 94739 CGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA---CAAAGTCGCGTT 94795 | ||| | | ||||| || | ||||| | ||| | ||| || |||| Sbjct 2988 CTTGTGTGGAGAAGAAGGCCAAGTGGGCCCTCCGCTGGATCGATGGCTCAGAGTC----- 2934 Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 |||||||||||| | |||| || || || ||||| || || |||||||| || || Sbjct 2933 -CTTTGCTGAGCGTATACTCGCCTTCGCTTGCGTTGAAGGGATTTTCTTCTCGGGAAGCT 2875 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 ||||||| || | |||||| ||||||||||| | ||||| || | ||||| |||| Sbjct 2874 TCTGCGCAATATTTTGGCTAAAGAAGCGAGGATTAATGCCTGGATTAACTTTCTCGAACG 2815 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTAT 94975 || | |||||||| || ||||| | ||| || |||||| || | || | Sbjct 2814 AGTTGATCTCTCGAGATGAGGGCTTACACTGTGATTTTGCGTGCTTGCTCTACAGCCTGC 2755 Query 94976 TGCGTATTAAACCAACGACTGAG--ACTATTC-ATTCTATTGTTAAGGAAGCCGTTGAGA 95032 || | || |||| || |||| | | || | ||| || || ||||| || | Sbjct 2754 TGAGGATGAAAC---TGAGTGAGGATCGAGTCAAGGGGATTATTGCTGATGCCGTAGAAA 2698 Query 95033 TTGAGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAA 95092 |||||| | ||| | | || |||||||| || || || | || ||||| ||| Sbjct 2697 TTGAGAGGGAATTTGTTTGCGAAGCCCTTCCTTGTGCCCTGGTTGGGATGAACGGTGATC 2638 Query 95093 AAATGTCTGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTC 95152 ||| | | || ||||| | ||| ||||| || ||||||| | | |||| | | Sbjct 2637 TGATGAGTCAGTACATTGAATTCGTAGCTGATCGACTGTTGAATGA-ACTTGGGTACAGC 2579 Query 95153 CAATT-TGGAA-CTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAA 95210 |||| | || | ||| || |||||||| | ||||| || || | | ||||| Sbjct 2578 AAATTATACAATGTGCAA-AACCCATTTGATTGGATGGAATTGATCAGTTTGCAGGGGAA 2520 Query 95211 GACAAACTTCTTCGAAAAGAGGGTTGGGGACTA 95243 || || ||||| || ||||||||||| || || Sbjct 2519 AACGAATTTCTTTGAGAAGAGGGTTGGTGAATA 2487 >seq1271 Length=174858 Score = 113 bits (124), Expect = 5e-20 Identities = 236/342 (69%), Gaps = 21/342 (6%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT-TTCATTATCAAA 9615 ||||| |||||| | || || || || || || |||| |||||| || ||| | ||||| Sbjct 167742 TCAAGAATATCAGCACGGTTAGTTGCCGCAATTACAATAATACCAGTGTTCCCT-TCAAA 167800 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| || ||| |||| ||||| | ||| ||||||| ||||||||| | Sbjct 167801 ACCATCCATTTCCGTC-AAAGCTGGTTCAGAGTCTGTTCCCTTTCATCATTTCC------ 167853 Query 9676 ACCACCAGCACTGCGTTGCTTT-------CCCACGGCATCAATCTCATCAATGAAGACGA 9728 ||||||| | |||| || | || || |||||||| ||||| | || || | Sbjct 167854 ACCACCAATTC-CCGTTCCTCTTTGACGCCCAACAGCATCAATTTCATCGACAAATACAA 167912 Query 9729 TGCATGGTTGATT-TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 9787 |||| || ||| | | | | ||| ||| ||||| || || || ||| || ||| Sbjct 167913 TGCAGGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGGACTCGTGAGGCACCAACA 167971 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 9846 |||||||||||||| ||||| | | | | | |||| || || || ||| || ||| Sbjct 167972 CCAACAAACATCTCAACAAACTCCGAACCTG-ATATTGAGAAAAATGGAACACCAGCTTC 168030 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || ||||| || ||| || | |||| || |||||||| Sbjct 168031 CCCAGCAATTGCCTTGGCTAGCAACATCTTTCCAGTACCTGG 168072 >seq83971 Length=1406 Score = 98.7 bits (108), Expect = 1e-15 Identities = 195/283 (69%), Gaps = 17/283 (6%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || |||||||| || ||||| || || ||||| || || || | ||||||||| | | Sbjct 584 AACCCATCCATTTCAGTCAAGAGCTGATTAATGGTCTGCTCTCTCTCATCATTCCCA--C 641 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | | | || || | | |||| | ||||| |||||||||||||||||||| || |||| Sbjct 642 CTCCAAGTCCCGCCCCTCTTTGCCTCCCCACTGCATCAATCTCATCAATGAACACAATGC 701 Query 9732 ATGGTTGATTTTCGCGA----GCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCA 9785 | || || ||| ||| || |||||| | |||| ||| |||| || |||| Sbjct 702 AAGG-TGCTTT---CGACTTGGCCTTTTCAAACAAATCC---TCACTCTTGAAGCTCCCA 754 Query 9786 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9845 |||| || |||| |||||||| | || ||| | ||| | ||| || || | | Sbjct 755 CACCCACGAACAATTCCACAAACTCTGAGGCTGCACACGAAAAGAATGGCACCCCGGCCT 814 Query 9846 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 |||| |||| || | ||| | ||| || || || ||||| || Sbjct 815 CACCGGCAACTGCCCTGGCCAAAAGGGTTTTCCCAGTACCAGG 857 >seq4336 Length=101003 Score = 84.2 bits (92), Expect = 3e-11 Identities = 229/345 (66%), Gaps = 22/345 (6%) Strand=Plus/Minus Query 9555 CATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTG--TTTCATTATC 9612 ||||||| | ||| ||| || || || || | || | || ||||| || | | | Sbjct 711 CATCAAGAACATCTGGGCGGTTAGTTGCTGCCAACACTATAACACCTGAATTCCCTGAG- 653 Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 || |||||||| || ||||| || || || ||||| || || | ||||||||| | Sbjct 652 -AACCCATCCATTTCAGTCAAGAGCTGATTGATAGTCTGCTCTCTTTCATCATTACCA-- 596 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | | | || || | | ||| | || || |||||||||||||||||||| || ||| Sbjct 595 CCTCCAAGTCCTGCCCCTCTCTGCCTCCCAACAGCATCAATCTCATCAATGAACACAATG 536 Query 9731 CATGG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCC 9783 || || |||| ||| || ||||| | ||| | ||| |||| || || Sbjct 535 CAAGGCGCTTTTGACTTT-----GCCTTCTCAAACAAATCTC--TCACTCTTGAAGCTCC 483 Query 9784 CACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGA 9843 ||| || ||||||| |||||||| | || ||| | ||| | ||| || || | Sbjct 482 CACGCCCACAAACAATTCCACAAACTCTGAGGCTGCACACGAAAAGAATGGCACCCCGGC 423 Query 9844 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||||| |||| || | ||| | ||| || || || ||||| || Sbjct 422 CTCACCGGCAACTGCCCTGGCCAAAAGGGTTTTCCCAGTACCAGG 378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582608167618600