Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq341 107 2e-18 seq1039 89.7 6e-13 seq46628 86.0 7e-12 seq76969 82.4 8e-11 seq2223 82.4 8e-11 seq184 82.4 8e-11 >seq341 Length=228855 Score = 107 bits (118), Expect = 2e-18 Identities = 330/504 (65%), Gaps = 10/504 (2%) Strand=Plus/Plus Query 74767 AGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCT 74826 |||| ||||||| ||||| || ||||| || | | |||||||| | ||| |||| Sbjct 2791 AGCCCTCATCTCGAGAGATCAACTCGTTCGAGAAAGTTAATCCAGGCATTAATCCTCGCT 2850 Query 74827 TCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAA 74886 |||| | |||||| || || |||||| || |||||| || ||||| || || || | Sbjct 2851 TCTTTAGCCAAAATATTGCGCAGAAGCTTCCCGAGAAGAAAATCCCTTCAACGCAAGCGA 2910 Query 74887 AGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCAG 74946 |||||| | || | || || | | | | ||||| | ||||| | | Sbjct 2911 AGGCGAGTATACGCTCAGCAAAGGACTCTGAGCCATCGATCCAGCGGAGGGCCCACTTGG 2970 Query 74947 CTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGG 75006 | || | || ||| || || ||||| || ||||| || || |||||| || | Sbjct 2971 CCTTCTTCTCCACACAAGGAACGGTCTCGATTGCGTGGAAAAGCCTATTCTTCTCCTCCG 3030 Query 75007 GATCCTTGACG--AGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTT 75064 |||||||| || || ||| | ||| |||| |||| ||||| || ||| | Sbjct 3031 AATCCTTGATATAAGATT--CAAGAAGAAGACTGTACATCTCAGAATGGATATTCTCAAT 3088 Query 75065 GAACGACT-GGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGAAAA 75121 ||| | || || | || || | || ||||| | || || || ||||| |||| Sbjct 3089 CG-CGATTTGGAACCCATAAAACGCACGAGCCTCCGAGATTTGAACCTCCTTCATGAACC 3147 Query 75122 ATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCAT 75181 | || ||| ||||||| ||||||||||| |||||||||||||| || || | Sbjct 3148 TTCCAG--CGAGGTTCTCCAAAACGATGCCGTCTGAGGCGGCGAAAAAGGCAAGAATGTG 3205 Query 75182 TTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAA 75241 || || || || ||| || ||||| ||||| ||||| | || | ||| | ||| Sbjct 3206 CTTAATGAAATGCTTCTCGTCCTCAGTCAGTTTTTCCCAGTGCTGTATATCCTGGGACAA 3265 Query 75242 ATCAATCTCCTCGACCGTCCAGAA 75265 ||| | ||| || ||||||| || Sbjct 3266 ATCGACCTCTTCCGCCGTCCAAAA 3289 >seq1039 Length=153527 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 72779 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 72838 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 72839 TGAGCTACGAAAGC 72852 >seq46628 Length=54489 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 79620 CAGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-A 79678 || |||||| ||| |||| | || |||| ||||||||||||||||||||||||||| | Sbjct 42799 CAAACTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAA 42858 Query 79679 CCAATTGAGCTACGAAAGC 79697 |||| |||||||||| ||| Sbjct 42859 CCAACTGAGCTACGAGAGC 42877 >seq76969 Length=2616 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 2288 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2347 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 2348 TGAGCTACGAGAGCA 2362 >seq2223 Length=71887 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 13839 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 13780 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 13779 TGAGCTACGAGAGCA 13765 >seq184 Length=487976 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 268723 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 268664 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 268663 TGAGCTACGAGAGCA 268649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546603699497000