Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq89515 572 2e-158 seq971 206 3e-48 seq7509 131 2e-25 seq2942 131 2e-25 seq503 131 2e-25 seq499 131 2e-25 seq5532 100 3e-16 seq10355 96.9 4e-15 seq559 96.9 4e-15 >seq89515 Length=155578 Score = 572 bits (634), Expect = 2e-158 Identities = 701/954 (73%), Gaps = 2/954 (0%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| ||||||||||| | ||||| || | | || || | | ||| Sbjct 1490 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTA 1432 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| |||| || ||||| || || || || ||||| || |||||||| ||||| || Sbjct 1431 TTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTT 1372 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| ||||||||||| || |||||||| || | | || | || Sbjct 1371 TCTGGATCTCTACTTTATGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCA 1312 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | ||||| ||||||||||||||||| ||| | ||||| |||||| | ||| Sbjct 1311 GCTATAGGTTTGCACTTTTACCCAATCTGGGAAGCGGCATCCGTTGATGAATGGTTATAC 1252 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 || || || || || |||| |||| | |||||| | | ||| | | ||||||| Sbjct 1251 AACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 1192 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | || || ||||| |||||||| ||||||||| Sbjct 1191 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATAT 1132 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || || | || |||||| | |||| ||| | ||||||||| | Sbjct 1131 TCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGT 1072 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 || ||||||||||||||||| || ||||| ||||| |||||||| ||| |||||||||| Sbjct 1071 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 1012 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 || ||||||||||| || ||||||||||| || ||| | || ||||| ||||| || || Sbjct 1011 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGC 952 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || ||| || ||||| || | || |||||| | | || || || Sbjct 951 GGCTCCCTATTCAGCGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACC 892 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| ||||| || | ||||||| |||||| ||||| ||||| || || || Sbjct 891 ACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAAT 832 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 || ||||| || || ||||| ||||| || | |||||||| |||||| |||||| ||| Sbjct 831 ATCGTAGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTCAACAAC 772 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925 || | | ||||||||||| || || | || || || | |||||||| ||||| Sbjct 771 TCTCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCT 712 Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985 | ||| | |||| ||||| |||||||| || |||||||| |||||||| || || | Sbjct 711 TTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTT 652 Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 || | || || ||| ||| |||| |||||| |||||||||| ||||||||| Sbjct 651 GATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGT 592 Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 |||||||||||||| || ||||||||||| |||||||| || ||||| ||| || Sbjct 591 ATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTTCT 538 Score = 131 bits (144), Expect = 2e-25 Identities = 200/282 (71%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || || || ||||| ||| | || | || || | | ||| || || Sbjct 120995 ACCTGTAACTATTCAATACCCCTACGAAAAATTGATCACATCGGAACGTTTCCGAGGACG 120936 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || |||| ||| ||||| || || || || ||||| || ||||| | ||||| ||||| Sbjct 120935 AATCCACTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGTGTATGTCCTAT 120876 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATG--AACAAACAGAC-AAAGAAGAAAGAACTTAG 19471 || |||| || || |||||| || ||| | | | |||||| | ||||| Sbjct 120875 AGATTTACCCGTTGTTGATTGGAAATTGGAAACGGATATTCGAAAGAAACGATTACTTA- 120817 Query 19472 AAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCC 19531 |||| || || |||||| ||||| || || ||||| ||||| |||||||| || Sbjct 120816 --ATTACAGTATTGATTTTGGAATCTGTATATTTTGTGGTAATTGCGTTGAGTATTGTCC 120759 Query 19532 AACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTAC 19573 |||||| ||| |||| ||||| |||||||||||| | |||| Sbjct 120758 AACAAATTGTTTATCAATGACTGAAGAATATGAACTTTCTAC 120717 >seq971 Length=113153 Score = 206 bits (228), Expect = 3e-48 Identities = 225/299 (75%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 176338 CACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCA 176397 ||||| ||||||||||||||||| ||| | ||||| |||||| | ||||| || || || Sbjct 73176 CACTTTTACCCAATCTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGTGGTCCT 73117 Query 176398 TACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGG 176457 || |||| |||| | |||||| | | ||| | | ||||||||| || | ||| Sbjct 73116 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 73057 Query 176458 GAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTA 176517 ||||||||| | || || ||||| |||||||| ||||||||| || | || || Sbjct 73056 AAACTTAGTTTCCATCTGGGTATGCGACCTTGGATTACTGTTGCATATTCAACTCCTGTT 72997 Query 176518 TCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGT 176577 | || || || || |||||| | |||| ||| | ||||||||| ||| ||||||| | Sbjct 72996 GCAGCTGCTATCGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGAT 72937 Query 176578 ATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAA 176636 |||||||| || ||||| ||||| |||||||| ||| |||||||||| || ||||| || Sbjct 72936 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAA 72878 >seq7509 Length=8151 Score = 131 bits (144), Expect = 2e-25 Identities = 200/282 (71%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || || || ||||| ||| | || | || || | | ||| || || Sbjct 6331 ACCTGTAACTATTCAATACCCCTACGAAAAATTGATCACATCGGAACGTTTCCGAGGACG 6272 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || |||| ||| ||||| || || || || ||||| || ||||| | ||||| ||||| Sbjct 6271 AATCCACTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGTGTATGTCCTAT 6212 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATG--AACAAACAGAC-AAAGAAGAAAGAACTTAG 19471 || |||| || || |||||| || ||| | | | |||||| | ||||| Sbjct 6211 AGATTTACCCGTTGTTGATTGGAAATTGGAAACGGATATTCGAAAGAAACGATTACTTA- 6153 Query 19472 AAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCC 19531 |||| || || |||||| ||||| || || ||||| ||||| |||||||| || Sbjct 6152 --ATTACAGTATTGATTTTGGAATCTGTATATTTTGTGGTAATTGCGTTGAGTATTGTCC 6095 Query 19532 AACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTAC 19573 |||||| ||| |||| ||||| |||||||||||| | |||| Sbjct 6094 AACAAATTGTTTATCAATGACTGAAGAATATGAACTTTCTAC 6053 >seq2942 Length=47462 Score = 131 bits (144), Expect = 2e-25 Identities = 200/282 (71%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || || || ||||| ||| | || | || || | | ||| || || Sbjct 30155 ACCTGTAACTATTCAATACCCCTACGAAAAATTGATCACATCGGAACGTTTCCGAGGACG 30096 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || |||| ||| ||||| || || || || ||||| || ||||| | ||||| ||||| Sbjct 30095 AATCCACTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGTGTATGTCCTAT 30036 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATG--AACAAACAGAC-AAAGAAGAAAGAACTTAG 19471 || |||| || || |||||| || ||| | | | |||||| | ||||| Sbjct 30035 AGATTTACCCGTTGTTGATTGGAAATTGGAAACGGATATTCGAAAGAAACGATTACTTA- 29977 Query 19472 AAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCC 19531 |||| || || |||||| ||||| || || ||||| ||||| |||||||| || Sbjct 29976 --ATTACAGTATTGATTTTGGAATCTGTATATTTTGTGGTAATTGCGTTGAGTATTGTCC 29919 Query 19532 AACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTAC 19573 |||||| ||| |||| ||||| |||||||||||| | |||| Sbjct 29918 AACAAATTGTTTATCAATGACTGAAGAATATGAACTTTCTAC 29877 >seq503 Length=151382 Score = 131 bits (144), Expect = 2e-25 Identities = 200/282 (71%), Gaps = 6/282 (2%) Strand=Plus/Plus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || || || ||||| ||| | || | || || | | ||| || || Sbjct 129784 ACCTGTAACTATTCAATACCCCTACGAAAAATTGATCACATCGGAACGTTTCCGAGGACG 129843 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || |||| ||| ||||| || || || || ||||| || ||||| | ||||| ||||| Sbjct 129844 AATCCACTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGTGTATGTCCTAT 129903 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATG--AACAAACAGAC-AAAGAAGAAAGAACTTAG 19471 || |||| || || |||||| || ||| | | | |||||| | ||||| Sbjct 129904 AGATTTACCCGTTGTTGATTGGAAATTGGAAACGGATATTCGAAAGAAACGATTACTTA- 129962 Query 19472 AAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCC 19531 |||| || || |||||| ||||| || || ||||| ||||| |||||||| || Sbjct 129963 --ATTACAGTATTGATTTTGGAATCTGTATATTTTGTGGTAATTGCGTTGAGTATTGTCC 130020 Query 19532 AACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTAC 19573 |||||| ||| |||| ||||| |||||||||||| | |||| Sbjct 130021 AACAAATTGTTTATCAATGACTGAAGAATATGAACTTTCTAC 130062 >seq499 Length=225045 Score = 131 bits (144), Expect = 2e-25 Identities = 200/282 (71%), Gaps = 6/282 (2%) Strand=Plus/Plus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || || || ||||| ||| | || | || || | | ||| || || Sbjct 213965 ACCTGTAACTATTCAATACCCCTACGAAAAATTGATCACATCGGAACGTTTCCGAGGACG 214024 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || |||| ||| ||||| || || || || ||||| || ||||| | ||||| ||||| Sbjct 214025 AATCCACTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGTGTATGTCCTAT 214084 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATG--AACAAACAGAC-AAAGAAGAAAGAACTTAG 19471 || |||| || || |||||| || ||| | | | |||||| | ||||| Sbjct 214085 AGATTTACCCGTTGTTGATTGGAAATTGGAAACGGATATTCGAAAGAAACGATTACTTA- 214143 Query 19472 AAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCC 19531 |||| || || |||||| ||||| || || ||||| ||||| |||||||| || Sbjct 214144 --ATTACAGTATTGATTTTGGAATCTGTATATTTTGTGGTAATTGCGTTGAGTATTGTCC 214201 Query 19532 AACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTAC 19573 |||||| ||| |||| ||||| |||||||||||| | |||| Sbjct 214202 AACAAATTGTTTATCAATGACTGAAGAATATGAACTTTCTAC 214243 >seq5532 Length=39607 Score = 100 bits (110), Expect = 3e-16 Identities = 120/160 (75%), Gaps = 6/160 (4%) Strand=Plus/Minus Query 176936 GCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTG 176995 |||| ||||| |||||||| || |||||||| |||||||| || ||| ||| | | Sbjct 3277 GCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAAGATGA--TAGTCAAGGC-G 3221 Query 176996 GTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTA 177055 || || ||| || |||| |||||| |||| |||| | ||||||| | ||||||| Sbjct 3220 GT---GTAATTAATATTTGGGCTGATATCATTAATTGTGCCAGCCTTGGTTTAGAAGTTA 3164 Query 177056 TGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGC 177095 |||| | ||||||||||| |||||||| | ||||| || Sbjct 3163 TGCATAAACGTAATGCTCATAACTTCCCTTTAGACCTAGC 3124 >seq10355 Length=40529 Score = 96.9 bits (106), Expect = 4e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 176596 GGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTC 176655 ||||| |||||||| ||| |||||||||| || ||||||||||| || ||||||||||| Sbjct 16694 GGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 16753 Query 176656 CATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTT 176696 || ||| | || ||||| ||||| || || || || || || Sbjct 16754 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATT 16794 >seq559 Length=144516 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 177019 GATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAAC 177078 |||||| |||| ||||| ||||| |||||||||||||||||||| |||||||||| ||| Sbjct 93062 GATATCATTAATCGTGCCAACCTCGGTATGGAAGTTATGCACGAATGTAATGCTCATAAC 93121 Query 177079 TTCCCACTTGACCTTGCTGCT 177099 ||||| || ||||| ||| || Sbjct 93122 TTCCCTCTAGACCTAGCTTCT 93142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602819127484800