Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq62581 241 4e-59 seq84895 194 5e-45 >seq62581 Length=657 Score = 241 bits (266), Expect = 4e-59 Identities = 461/668 (69%), Gaps = 26/668 (4%) Strand=Plus/Plus Query 39556 GAGCGTGTCACCCTTGGCCAGCAGCTCGTAGGTCGGGGCGTCGTCCAGCGGGATGTTCTC 39615 ||| ||||| ||| ||||||||| ||||| |||| ||| || | || || ||| Sbjct 3 GAGGGTGTCGCCCCGGGCCAGCAGGTCGTACGTCGCCTGGTCCTCGAAGTCGAGGTCCTC 62 Query 39616 CAGGTCGACGTGCTCCCCACGGTTACGACGGATGTTCTCGACGGCGTCGCCCATGATCGT 39675 ||| ||| || | ||||| || |||||| | |||||| | | || ||| Sbjct 63 CAGCACGAGGTCGATGTCGCGGTTGCGCTTGATGTTGATCAGCGCGTCGTCGAGGACCGT 122 Query 39676 GAGGTTCCGCAGGCCGAGGAAGTCCATCTTGACCGCGCCCATGCTC-TCGCACTGGGGGT 39734 ||||| |||||||| |||||||||||||||||| |||| || | |||||| |||| Sbjct 123 CAGGTTGCGCAGGCCCAGGAAGTCCATCTTGACCA-GCCCGAGCGCCTCGCACATCGGGT 181 Query 39735 AGTCCCACTGCGTGACGGTGACGCCGTCC-GCAGGACGGACCCACACCGGAAGGTGATCG 39793 |||| ||||||||| | | |||||||| || | || | | || | | ||| Sbjct 182 AGTCGAACTGCGTGATGATCGCGCCGTCCTGCTCG-CGCTTCATGATGGGCACGATGTCG 240 Query 39794 ACCAGGGGCTCGTTGGACATGATCACACCGGCCGCGTGCACGCCCATCTGGCGAACCAGA 39853 | ||| || ||| | |||||||| || ||||||||||| |||||| ||| || | | | Sbjct 241 ATCAGCGGATCGCTCGACATGATGACGCCGGCCGCGTGGACGCCCCACTGACGGATCTGG 300 Query 39854 CCTTCGAGCCCGAGCGCAGT---GTCGATCACCTCCTTCGA-GTCCTTGTCGTTCTCGTA 39909 || || || || || || || || ||| | || || ||| ||| | |||| Sbjct 301 CCCTCCAGGCCCAGGGCGGTCTGGTAGATG--CGCCG--GACGTCGGCGTCCTCGTCGTG 356 Query 39910 CAGGCCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGAAGATCCCCTC 39969 ||| |||| ||||| | ||| |||| ||| || ||| || ||| | |||| Sbjct 357 CAGCTTGCGGAAGTCGCCGCCGTCGCCGTACCGCTTGTCGTCCTTGTCGAACAGGCCCTT 416 Query 39970 CAGGGGCATCGACGC----GCCCATCACATCGGCCGGGTACGCCTTGGTCAGCTTCTCGC 40025 || | ||||| |||||| | ||||||||| ||||||||| | ||||| Sbjct 417 GAGCGT----GACGCCCTTGCCCATGATGTCGGCCGGGAGCGCCTTGGTGATGCGCTCGC 472 Query 40026 CGACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCG---TTGCGCGCCT 40082 || | ||| || | ||||| ||||| || |||||||| |||||| ||| | || Sbjct 473 CGTGCGAGAACGGGTAGTCCATGACGCGCGCGGCGTCCTTGATCGCGGCCTTG---GACT 529 Query 40083 TGATCCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGT 40142 ||| |||||||| ||| ||||| ||||| || | |||||||| | | |||||| Sbjct 530 TGAGGCGGCCGAACGTCGCGATCATCGCGACGCGCTCCTCGCCGTACTTGTTGCTGACGT 589 Query 40143 ACCGGATGACCTCGCCGCGACGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACA 40202 | ||||||||||||| |||||| || || |||||||||||||| | ||||||||| ||| Sbjct 590 AGCGGATGACCTCGCTGCGACGACGCTCGTCGAAGTCGATGTCGAAGTCGGGCATCGACG 649 Query 40203 CGCGCTCG 40210 |||||| Sbjct 650 GACGCTCG 657 >seq84895 Length=1121 Score = 194 bits (214), Expect = 5e-45 Identities = 466/700 (67%), Gaps = 14/700 (2%) Strand=Plus/Plus Query 40639 CATCTCGGCGGCCGTCTTGATGTAGTACCCGGAGCCCTCGAACCGGAAGCGGTTCGGGTT 40698 |||||||||||| | |||||||||| | || | |||||| ||||||||| |||| Sbjct 58 CATCTCGGCGGCGGACTTGATGTAGAAGTCGTTGGAGTCGAACTTGAAGCGGTTGGGGTC 117 Query 40699 GTCGAGCGTGGTGCCGGTCTGGACGCAGAGTAGGGCATCGTGCGCCTTGCTCTCGTCGGC 40758 | ||| ||| |||||| ||||||||| || || || ||| |||| | || |||| Sbjct 118 GGTGAGGGTGCTGCCGGACTGGACGCACAGCAGCGCCGAGTGGGCCTCGGCGTCCTCGGG 177 Query 40759 CGTGACGTAGTGGCTGTCGTTGGTGACCACCGGGGTGAGCGCGAGGTG---CTTGCCCAG 40815 | |||||| ||||||||| | | | | || |||| | |||| || Sbjct 178 ACTCGTGTAGTGCGAGTCGTTGGTCGCGATGGCCGGCAGGCCGAGATCGGCCTTG---AG 234 Query 40816 CCGGTAGAGGTCGTCGCGGACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAG 40875 ||| || ||||||| ||| |||||||||||| || ||||||||||| | ||| || Sbjct 235 CCGCAGCAGCCCGTCGCGCACGACCCGCTCGATCTCGAGACCGTGGTCCATCAGCTCGAG 294 Query 40876 GAAGTACCGGTCACGACCGAACACCTCCAGGTACCGGCCAGCCTCCGCAACGGCCTGGTC 40935 |||| | || ||||| | ||| || || | | ||| || |||| || Sbjct 295 GAAGAAGTTCTCCTTGCCGAAGATGTCCTGGAACTCGGCGGCCGAGGCGCGCGCCTTCTC 354 Query 40936 GTACTGCCCGAGGTTGAGCCGGGTCATGATCGCACCGCCAGGGCAGCCCGTGGTGACGAT 40995 ||| | |||| | |||| ||| |||| | || ||||| || || ||| |||| Sbjct 355 GTAGTTGCCGATGCGCAGCCACGTCTGGATCTCGCCCGAGGGGCACCCGGTCGTGGCGAT 414 Query 40996 CAGGCCCTCGTTGT-GCTCGGCGACGAGGTCGAAGTCCATGCGCGGGTACTTCCCGAGCA 41054 |||||||| | || || | || | |||||| ||| |||||| ||| | | | Sbjct 415 CAGGCCCTTGCCGTAGCGCTGCAGC-AGGTCGCGGTCGGCGCGCGG---CTTGCGGTACT 470 Query 41055 GGCCCTCTTGGTACGACCGAGAGCTGAGCTTCATGAGGTTGTGCAGGCCGGTCTTGTTCT 41114 ||||||| || || |||| || | |||||||||| ||| || ||| Sbjct 471 GGCCCTCGAGGCTCGCGTACGAGCCGATGCGGAACAGGTTGTGCATGCCCTCGGTGGTCT 530 Query 41115 CGGCGAGGATCGTGAGGTGGGTGTACGCACCGCGACCGCTCACGTCGTAACGCTTCTGGT 41174 ||| || | ||| | ||||||||| || || || ||| ||||||| ||| | Sbjct 531 CGGACAGCAGCGTCATGTGGGTGTAGGCGCCACGTCCGGCCACGTCGGCGTCGATCTTGG 590 Query 41175 CCTCGGTGCCCCACTGCACCCGCTCCTGATCGAAGCGCGAGCCC---GGAGCCATGTACG 41231 | | || ||||||||| || || || ||| | | || | || ||||| Sbjct 591 CGCCCTTGTTCCACTGCACGGCCTTCTTCTCCGTGCGGGGGATGTTGGGCGTCAGGTACG 650 Query 41232 CCTCGATGCCGATGATCGGCTTGACCCCAGCGGCCGTAGCTGTGGTGAAGAAGTCGTGCG 41291 |||| |||||||||||||||||||| || ||| | || || || ||||||||| | Sbjct 651 CCTCCATGCCGATGATCGGCTTGACGCCGTGCGCCTTGGCCTTGCTGTAGAAGTCGTAGG 710 Query 41292 CACCGTGCAGGTTGCCGTGGTCGGTGACGGCGACTGCCGG 41331 | ||||||||||||||||||||||| | |||| ||||| Sbjct 711 CGCCGTGCAGGTTGCCGTGGTCGGTCATCGCGATGGCCGG 750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160235889500610