Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq84895 302 1e-77 seq62581 282 1e-71 >seq84895 Length=1121 Score = 302 bits (334), Expect = 1e-77 Identities = 552/799 (69%), Gaps = 26/799 (3%) Strand=Plus/Plus Query 39546 CATCTCGGCGGCCGACTTCAGGTAGTACCCCTCGCCCTCGAACCGGAACCGATCCTCCTG 39605 |||||||||||| ||||| | |||| | | | | |||||| ||| || | | Sbjct 58 CATCTCGGCGGCGGACTTGATGTAGAAGTCGTTGGAGTCGAACTTGAAGCGGTTGGGGTC 117 Query 39606 GTAGAGGGTCGAGCCGGTCTGGACGCACAGCAGGGCGTCGTGGGCCGCAGCCTCCTCGAC 39665 | |||||| ||||| ||||||||||||||| || ||||||| | || |||||| Sbjct 118 GGTGAGGGTGCTGCCGGACTGGACGCACAGCAGCGCCGAGTGGGCCTCGGCGTCCTCGGG 177 Query 39666 CCGCGTGTAGTGCGAGTCGTTGGTGACCACCGGGGTGAGACCGAG----GCGCTGACCGA 39721 | ||||||||||||||||||||| | | | | || ||||| || ||| Sbjct 178 ACTCGTGTAGTGCGAGTCGTTGGTCGCGATGGCCGGCAGGCCGAGATCGGCCTTGA---- 233 Query 39722 GGCGGTAG-AGGTCGTCGCGGACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCC 39780 || | || || ||||||| ||| |||||||||||| || ||||||||||| | ||| Sbjct 234 -GCCGCAGCAGCCCGTCGCGCACGACCCGCTCGATCTCGAGACCGTGGTCCATCAGCTCG 292 Query 39781 AGGAAGAAGTTGTCCTTCCCGAAGATCTCCCGCCACTTCGCGGCCTCGGCGACGGCCTCC 39840 ||||||||||| ||||| |||||||| ||| | ||| |||||| |||| |||| | Sbjct 293 AGGAAGAAGTTCTCCTTGCCGAAGATGTCCTGGAACTCGGCGGCCGAGGCGCGCGCCTTC 352 Query 39841 TCGTACTGGCCGAGGTTGAGCCGGGTCATCACTGCGCCACCGGGGCATCCCGTGGTGCCG 39900 ||||| | ||||| | |||| ||| | |||| |||||| || || ||| || Sbjct 353 TCGTAGTTGCCGATGCGCAGCCACGTCTGGATCTCGCCCGAGGGGCACCCGGTCGTGGCG 412 Query 39901 ATCAGGCCCTCTGCGT-GCTCCGCCACCAGCTCGGCGTCCATGCGCGGGTACTTCCCGAG 39959 |||||||||| ||| || | | || ||| ||| ||| |||||| ||| | | Sbjct 413 ATCAGGCCCTTGCCGTAGCGCTG-CAGCAGGTCGCGGTCGGCGCGCGG---CTTGCGGTA 468 Query 39960 CAGGCCCTCGCTGTACGAGCGAGAGGAGAGCTTGAACAGGTTGTGCAGGCCGGTCTTGTT 40019 | |||||||| | || | ||| || |||||||||||||| ||| || | Sbjct 469 CTGGCCCTCGAGGCTCGCGTACGAGCCGATGCGGAACAGGTTGTGCATGCCCTCGGTGGT 528 Query 40020 CGTGGCGAGCATGGTCATGTGGGTGTAGGCACCCCGACCGCTCACGTCGTACCGCTTCTG 40079 | || |||| ||||||||||||||||| || || ||| ||||||| ||| Sbjct 529 CTCGGACAGCAGCGTCATGTGGGTGTAGGCGCCACGTCCGGCCACGTCGGCGTCGATCTT 588 Query 40080 CTCGGGCGTGCCCCACTGGACCCGCTCCTGGTCGGAACGGTG---CCCCGGTGCGACGTA 40136 || | || |||||| || || || || | ||| | || | | ||| Sbjct 589 GGCGCCCTTGTTCCACTGCACGGCCTTCTTCTCCGTGCGGGGGATGTTGGGCGTCAGGTA 648 Query 40137 CGCCTCGATCCCGATGATGGGCTTGAC-CCCAGCGGCCTGCCCCTGCGTGAAGAAGTCGT 40195 |||||| || |||||||| |||||||| || ||| | || || ||| || ||||||||| Sbjct 649 CGCCTCCATGCCGATGATCGGCTTGACGCCGTGCGCCTTGGCCTTGC-TGTAGAAGTCGT 707 Query 40196 ACGCACCATGCAGGTTGCCGTGGTCGGTCATCGCGAGGGCTCTCATGCCCTGCGCCTTGG 40255 | || || |||||||||||||||||||||||||||| ||| ||| |||| || || Sbjct 708 AGGCGCCGTGCAGGTTGCCGTGGTCGGTCATCGCGATGGCCGGCAT---CTGCAGCTCGG 764 Query 40256 CCTCG---GCGAACATGTCCTTCAGCCGAGCCGCCCCGTCGAGCAGGCTGTACTCGGAGT 40312 | | |||||| | | | ||| | ||||| |||||||||| |||||| | || Sbjct 765 CGGTGCGCTCGAACAGGCCGTCGAGCAGGGCCGCTCCGTCGAGCATCGAGTACTCCGTGT 824 Query 40313 GGACATGCAGGTGAACGAA 40331 | || |||||||| ||||| Sbjct 825 GCACGTGCAGGTGCACGAA 843 >seq62581 Length=657 Score = 282 bits (312), Expect = 1e-71 Identities = 466/665 (70%), Gaps = 22/665 (3%) Strand=Plus/Plus Query 38463 GAGGGTGTCGCCCCTGGCCAGCAGCTCGTAGGTTGCCGGGTCGTCCAGCGGGATGTTCTC 38522 |||||||||||||| ||||||||| ||||| || ||| |||| || | || || ||| Sbjct 3 GAGGGTGTCGCCCCGGGCCAGCAGGTCGTACGTCGCCTGGTCCTCGAAGTCGAGGTCCTC 62 Query 38523 GATGTCGACGTGCTCACCACGGTTGCGGCGGATGTTCTCGACCGCGTCGCCCATGATCGT 38582 | ||| || | |||||||| |||||| | ||||||| | | || ||| Sbjct 63 CAGCACGAGGTCGATGTCGCGGTTGCGCTTGATGTTGATCAGCGCGTCGTCGAGGACCGT 122 Query 38583 GAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGGGCCTCGCAGCTCGGGTA 38642 ||||| || || || |||||||||||||| | ||| || || |||||||| ||||||| Sbjct 123 CAGGTTGCGCAGGCCCAGGAAGTCCATCTTGACCAGCCCGAGCGCCTCGCACATCGGGTA 182 Query 38643 GTCGAACTGCGTGATCGTCACGCCGTCC-GCAGGCCGCACCCACGTAGGGATGTGGTCGA 38701 ||||||||||||||| || |||||||| || || || | | || | | ||||| Sbjct 183 GTCGAACTGCGTGATGATCGCGCCGTCCTGCTCGC-GCTTCATGATGGGCACGATGTCGA 241 Query 38702 CCAGCGGCTCGTCAGACATGATCACACCGGCTGCGTGCACGCCCATCTGCCGGACGAGTC 38761 |||||| ||| |||||||| || ||||| ||||| |||||| ||| |||| | | Sbjct 242 TCAGCGGATCGCTCGACATGATGACGCCGGCCGCGTGGACGCCCCACTGACGGATCTGGC 301 Query 38762 CTTCGAGGCCACGCGCGA---GGTCGATGACCTCCTTCGCGTCCTTGTCGTTCTCGTACA 38818 | || ||||| | ||| ||| |||| | || |||| ||| | |||| || Sbjct 302 CCTCCAGGCCCAGGGCGGTCTGGTAGATG--CGCCGGA-CGTCGGCGTCCTCGTCGTGCA 358 Query 38819 GCGCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGGTGATGCCCTCCA 38878 || |||| ||||| | ||| |||| ||| || ||| || | | ||||| | Sbjct 359 GCTTGCGGAAGTCGCCGCCGTCGCCGTACCGCTTGTCGTCCTTGTCGAACAGGCCCTTGA 418 Query 38879 GGGGCATCGACGC----GCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCG 38934 | | ||||| |||||| | |||||||||| ||||||||| | ||||||| Sbjct 419 GCGT----GACGCCCTTGCCCATGATGTCGGCCGGGAGCGCCTTGGTGATGCGCTCGCCG 474 Query 38935 ACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCG---TTGCGCGCCTTG 38991 | ||| || | ||||| ||||| || |||||||| |||||| ||| | |||| Sbjct 475 TGCGAGAACGGGTAGTCCATGACGCGCGCGGCGTCCTTGATCGCGGCCTTG---GACTTG 531 Query 38992 ATCCGTCCGTACGTCGCGATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTGACGTAC 39051 | || ||| ||||||||||| ||||| || ||||||||| | | ||||||| Sbjct 532 AGGCGGCCGAACGTCGCGATCATCGCGACGCGCTCCTCGCCGTACTTGTTGCTGACGTAG 591 Query 39052 CGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACA 39111 ||||| || |||| || ||||| || |||||||||||||| | ||||||||| || | Sbjct 592 CGGATGACCTCGCTGCGACGACGCTCGTCGAAGTCGATGTCGAAGTCGGGCATCGACGGA 651 Query 39112 CGCTC 39116 ||||| Sbjct 652 CGCTC 656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159545424239730