Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq84895 297 6e-76 seq62581 260 4e-65 >seq84895 Length=1121 Score = 297 bits (328), Expect = 6e-76 Identities = 557/805 (69%), Gaps = 38/805 (5%) Strand=Plus/Plus Query 39979 CATCTCGGCGGCCGACTTCAGGTAGTACCCTTCGCCCTCGAACCGGAAGCGATCCTCCTG 40038 |||||||||||| ||||| | |||| | | | | |||||| |||||| | | Sbjct 58 CATCTCGGCGGCGGACTTGATGTAGAAGTCGTTGGAGTCGAACTTGAAGCGGTTGGGGTC 117 Query 40039 GTAGAGGGACGAGCCGGTCTGGACGCACAGCAGGGCGTCGTGGGCCGCAGCCTCCTCGAC 40098 | ||||| ||||| ||||||||||||||| || ||||||| | || |||||| Sbjct 118 GGTGAGGGTGCTGCCGGACTGGACGCACAGCAGCGCCGAGTGGGCCTCGGCGTCCTCGGG 177 Query 40099 CCGCGTGTAGTGCGAGTCGTTGGTGACCACCGGGGTGAGACCGAG----GCGCTGACCGA 40154 | ||||||||||||||||||||| | | | | || ||||| || ||| Sbjct 178 ACTCGTGTAGTGCGAGTCGTTGGTCGCGATGGCCGGCAGGCCGAGATCGGCCTTGA---- 233 Query 40155 GGCGGTAG-AGGTCGTCGCGGACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCC 40213 || | || || ||||||| ||| |||||||||||| || ||||||||||| | ||| Sbjct 234 -GCCGCAGCAGCCCGTCGCGCACGACCCGCTCGATCTCGAGACCGTGGTCCATCAGCTCG 292 Query 40214 AGGAAGAAGTTGTCCTTCCCGAAGATCTCCCGCCACTTCGCAGCCTCGGCGACGGCCTCC 40273 ||||||||||| ||||| |||||||| ||| | ||| || ||| |||| |||| | Sbjct 293 AGGAAGAAGTTCTCCTTGCCGAAGATGTCCTGGAACTCGGCGGCCGAGGCGCGCGCCTTC 352 Query 40274 TCGTACTGACCGAGGTTGAGCCGGGTC---ATCACAGCACCACCGGGGCATCCCGTGGTG 40330 ||||| | |||| | |||| ||| ||| | || | | |||||| || || ||| Sbjct 353 TCGTAGTTGCCGATGCGCAGCCACGTCTGGATCTC-GCCCGA--GGGGCACCCGGTCGTG 409 Query 40331 CCGATCAGGCCCTCTGCGT-GCTCGGCCACCAGCTCGGCGTCCATGCGCGGGTACTTCCC 40389 |||||||||||| ||| || | | || ||| ||| ||| |||||| ||| | Sbjct 410 GCGATCAGGCCCTTGCCGTAGCGCTG-CAGCAGGTCGCGGTCGGCGCGCGG---CTTGCG 465 Query 40390 GAGCAGACCCTCGCTGTACGAGCGAGAGGAGAGCTTGAACAGGTTGTGCAGGCCGGTCTT 40449 | | | |||||| | || | ||| || |||||||||||||| ||| || Sbjct 466 GTACTGGCCCTCGAGGCTCGCGTACGAGCCGATGCGGAACAGGTTGTGCATGCC---CTC 522 Query 40450 GTTCGTCGCG---AGCATGGTCATGTGGGTGTAGGCACCCCGACCGCTCACGTCGTACCG 40506 | | ||| || |||| ||||||||||||||||| || || ||| ||||||| Sbjct 523 GGTGGTCTCGGACAGCAGCGTCATGTGGGTGTAGGCGCCACGTCCGGCCACGTCGGCGTC 582 Query 40507 CTTCTGCTCGGGCGTGCCCCACTGGACCCGCTCCTGGTCGGAGCGCG---AGCCCGGCGC 40563 ||| || | || |||||| || || || || | ||| | | |||| Sbjct 583 GATCTTGGCGCCCTTGTTCCACTGCACGGCCTTCTTCTCCGTGCGGGGGATGTTGGGCGT 642 Query 40564 GACGTACGCCTCGATCCCGATGATGGGCTTGAC-CCCAGCGGCCTGCCCCTGCGTGAAGA 40622 | ||||||||| || |||||||| |||||||| || ||| | || || ||| || ||| Sbjct 643 CAGGTACGCCTCCATGCCGATGATCGGCTTGACGCCGTGCGCCTTGGCCTTGC-TGTAGA 701 Query 40623 AGTCGTACGCACCGTGCAGGTTGCCGTGGTCGGTCATCGCGAGGGCCTTCATGCCCTGCG 40682 ||||||| || ||||||||||||||||||||||||||||||| |||| ||| |||| Sbjct 702 AGTCGTAGGCGCCGTGCAGGTTGCCGTGGTCGGTCATCGCGATGGCCGGCAT---CTGCA 758 Query 40683 CCTTGGCCTCG---GCGAACATGTCCTTCAGTCGAGCCGCCCCGTCGAGAAGGCTGTACT 40739 || ||| | |||||| | | | || | ||||| |||||||| | ||||| Sbjct 759 GCTCGGCGGTGCGCTCGAACAGGCCGTCGAGCAGGGCCGCTCCGTCGAGCATCGAGTACT 818 Query 40740 CGGAGTGGACATGCAGGTGGACGAA 40764 | | ||| || |||||||| ||||| Sbjct 819 CCGTGTGCACGTGCAGGTGCACGAA 843 >seq62581 Length=657 Score = 260 bits (288), Expect = 4e-65 Identities = 457/659 (69%), Gaps = 16/659 (2%) Strand=Plus/Plus Query 38896 GAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCATCCAGCGGGATGTTCTC 38955 ||| |||||||||| ||||||||| ||||||||||| |||| || | || || ||| Sbjct 3 GAGGGTGTCGCCCCGGGCCAGCAGGTCGTACGTCGCCTGGTCCTCGAAGTCGAGGTCCTC 62 Query 38956 GATGTCGACGTGCTCACCACGGTTGCGGCGGATGTTCTCGACCGCGTCGCCCATGATCGT 39015 | ||| || | |||||||| |||||| | ||||||| | | || ||| Sbjct 63 CAGCACGAGGTCGATGTCGCGGTTGCGCTTGATGTTGATCAGCGCGTCGTCGAGGACCGT 122 Query 39016 GAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTA 39075 ||||| || || || |||||||||||||| | ||| || || |||||||| ||||||| Sbjct 123 CAGGTTGCGCAGGCCCAGGAAGTCCATCTTGACCAGCCCGAGCGCCTCGCACATCGGGTA 182 Query 39076 GTCGAACTGCGTGATCGTTACGCCGTCC-GCAGGCCGCACCCACGTCGGGATGTGATCGA 39134 ||||||||||||||| | |||||||| || | ||| | | || | | |||| Sbjct 183 GTCGAACTGCGTGATGATCGCGCCGTCCTGCTCG-CGCTTCATGATGGGCACGATGTCGA 241 Query 39135 CCAGCGGCTCGTCGGACATGATCACACCGGCTGCGTGCACGCCCATCTGCCGGACGAGAC 39194 |||||| ||| |||||||| || ||||| ||||| |||||| ||| |||| | | Sbjct 242 TCAGCGGATCGCTCGACATGATGACGCCGGCCGCGTGGACGCCCCACTGACGGATCTGGC 301 Query 39195 CTTCGAGGCCACGCGCGAGGTCAATGACCTCCTTCG--CGTCCTTGTCGTTCTCGTACAG 39252 | || ||||| | || |||| | | | || |||| ||| | |||| ||| Sbjct 302 CCTCCAGGCCCAGGGC--GGTCTGGTAGATGCGCCGGACGTCGGCGTCCTCGTCGTGCAG 359 Query 39253 CGCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGGTGATGCCCTCCAG 39312 | |||| ||||| | ||| |||| ||| || ||| || | | ||||| || Sbjct 360 CTTGCGGAAGTCGCCGCCGTCGCCGTACCGCTTGTCGTCCTTGTCGAACAGGCCCTTGAG 419 Query 39313 GGGCATCGACGC----GCCCATCACATCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCGA 39368 | ||||| |||||| | ||||||||| ||||||||| | ||||||| Sbjct 420 CG----TGACGCCCTTGCCCATGATGTCGGCCGGGAGCGCCTTGGTGATGCGCTCGCCGT 475 Query 39369 CCTGAAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGGGCCTTGATCC 39428 | || || | ||||| ||||| || |||||||| |||||| || ||||| | Sbjct 476 GCGAGAACGGGTAGTCCATGACGCGCGCGGCGTCCTTGATCGCGGCCTTGGACTTGAGGC 535 Query 39429 TGCCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGA 39488 |||| ||||||||||| ||||| || ||||||||| | | ||||||| |||| Sbjct 536 GGCCGAACGTCGCGATCATCGCGACGCGCTCCTCGCCGTACTTGTTGCTGACGTAGCGGA 595 Query 39489 TCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGA--GACGC 39545 | || |||| || ||||| || |||||||||||||| | ||||||||| || ||||| Sbjct 596 TGACCTCGCTGCGACGACGCTCGTCGAAGTCGATGTCGAAGTCGGGCATCGACGGACGC 654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160069666382250