Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq62369 170 9e-38 seq86170 114 6e-21 seq59516 95.1 6e-15 >seq62369 Length=566 Score = 170 bits (188), Expect = 9e-38 Identities = 250/354 (71%), Gaps = 0/354 (0%) Strand=Plus/Minus Query 66084 GACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCG 66143 || ||||| || || ||| | | | || ||| ||| || |||||||| || ||| Sbjct 354 GAGGTCATCCCGACGGGCGCCACGACGCTCGACATCGCGCTCGGCATCGGCGGACTGCCG 295 Query 66144 AGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTC 66203 | ||||| || || || |||||||| || || || || || ||| | || | || Sbjct 294 CGCGGCCGTGTCGTCGAGATCTACGGTCCGGAGTCGTCGGGTAAGACGACCGTCGCCCTG 235 Query 66204 CACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCTGCCTACATCGACGCTGAGCAC 66263 |||||||||||||| |||||| |||||||| ||| |||| ||||||||| |||||| Sbjct 234 CACGCGGTGGCCAACGCCCAGCGCGCCGGTGGTGTCGCGGCCTTCATCGACGCCGAGCAC 175 Query 66264 TCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTT 66323 | || ||||| || |||||| |||||| || ||| |||| ||| || | Sbjct 174 GCGCTCGACCCCGACTACGCCCGCAAGCTCGGCGTCGACACCGACGCCCTGCTGATCTCG 115 Query 66324 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 66383 ||||| |||| || |||||||| || ||||||| ||| | || || || |||| Sbjct 114 CAGCCCGACAGCGGTGAGCAGGCTCTCGAGATCGCCGACATGCTGATCCGCTCCGGCGCC 55 Query 66384 CTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTC 66437 || |||| ||||| | ||||| || ||||| || ||||| ||||||||| || Sbjct 54 CTCGACATCATCGTCATCGACTCCGTCGCGGCGCTCGTGCCCCGCGCCGAGATC 1 >seq86170 Length=626 Score = 114 bits (126), Expect = 6e-21 Identities = 172/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 66687 GTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAAT 66746 ||||||||||||||||| || |||||||||||||||||||| ||||||||| | | Sbjct 601 GTCGGCAACCGCACCCGCGTCAAGGTCGTCAAGAACAAGCTCGCCCCGCCGTTCAAGCAG 542 Query 66747 GCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTG 66806 ||||||||| | || ||||||| |||||||| || |||| | || ||||| | Sbjct 541 GCCGAGTTCGACATCATGTACGGCCAGGGCATCAGCCGCGAGGGCAGCCTGATCGAC--G 484 Query 66807 GCCGTGTCG-CA-GGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGA 66864 | | |||| || || ||||| ||| | |||||||||| || ||||| | | | Sbjct 483 TCGGCGTCGACATCGGTCTGGTCCGCAAGGCCGGCGCCTGGTACACGTACGACGGCGACC 424 Query 66865 ACGTCGCCCAGGGCAAGCCCAAGGCCGTCCAGTGGCTCAAGGCCAACCCGGACATCACCG 66924 | | | ||||||||| ||| | |||| ||||||| |||||| ||| | ||| Sbjct 423 AGCTGGGTCAGGGCAAGGAGAAGTCGCGGCAGTTCCTCAAGGACAACCCCGACCTGGCCG 364 Query 66925 A 66925 | Sbjct 363 A 363 >seq59516 Length=1985 Score = 95.1 bits (104), Expect = 6e-15 Identities = 215/314 (68%), Gaps = 17/314 (5%) Strand=Plus/Minus Query 59478 TCGTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCAC-CCAAGGTGGGCAGGCCGTC 59536 || |||||| |||||||| |||||| ||||| |||||| || | | || | | || Sbjct 1271 TCATCGGCAACCTGACCGACGACCCGGAGCTCAAGTTCACTCCTTCGGGCGCCG-CAGTT 1213 Query 59537 GCCAACTTCACCGTCGTGTCCAA----CGAACGCCGCCGCGACGCCCAGGGCAAC---TG 59589 |||||||||||||||| ||| | ||||| || ||| ||| |||| || Sbjct 1212 GCCAACTTCACCGTCGCGTCGACGCCTCGAAC----CCTCGATCGTCAGACCAACGAGTG 1157 Query 59590 GGTCGACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGT 59649 | |||||||| || ||| | |||||| || ||||||| | |||||||||||| Sbjct 1156 GAAGGACGGCGAGGCTCTGTTCATTCGCTGCGCCGCCTGGCGCCAGCTCGCCGAGAACGT 1097 Query 59650 AGCGGAAAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCA-GCGCT 59708 || || || ||||| || |||| |||||||| || ||| || |||| ||| Sbjct 1096 CGCCGAGTCGCTGCAGAAGGGTCAGCAGGTCATCGTCCAGGGCCCGCT-GAGCATCCGCA 1038 Query 59709 CCTTCGAGACCAAGGAAGGCGACAAGC-GCACCGTCATCGAGGTGGAGGTAGACGAGATC 59767 || |||| |||| || | || |||| | ||||| || ||| |||||||| Sbjct 1037 ACTACGAGCGTCAGGACGG-ATCGCGCGGCACGAGCGTCGAGATGACGGTCAACGAGATC 979 Query 59768 GGCCCGTCGCTGCG 59781 || ||||||||||| Sbjct 978 GGTCCGTCGCTGCG 965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240697121299500