Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_029093.1 Length=75796 Score E Sequences producing significant alignments: (Bits) Value seq62369 165 4e-36 seq86170 114 6e-21 seq59516 95.1 6e-15 >seq62369 Length=566 Score = 165 bits (182), Expect = 4e-36 Identities = 249/354 (70%), Gaps = 0/354 (0%) Strand=Plus/Minus Query 65748 GACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCG 65807 || ||||| || || ||| | | | || ||| ||| || |||||||| || ||| Sbjct 354 GAGGTCATCCCGACGGGCGCCACGACGCTCGACATCGCGCTCGGCATCGGCGGACTGCCG 295 Query 65808 AGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTC 65867 | ||||| || || || |||||||| || || || || || ||| | || | || Sbjct 294 CGCGGCCGTGTCGTCGAGATCTACGGTCCGGAGTCGTCGGGTAAGACGACCGTCGCCCTG 235 Query 65868 CACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCAC 65927 |||||||||||||| || ||| |||||||| ||| |||| ||||||||| |||||| Sbjct 234 CACGCGGTGGCCAACGCCCAGCGCGCCGGTGGTGTCGCGGCCTTCATCGACGCCGAGCAC 175 Query 65928 TCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTT 65987 | || ||||| || |||||| |||||| || ||| |||| ||| || | Sbjct 174 GCGCTCGACCCCGACTACGCCCGCAAGCTCGGCGTCGACACCGACGCCCTGCTGATCTCG 115 Query 65988 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 66047 ||||| |||| || |||||||| || ||||||| ||| | || || || |||| Sbjct 114 CAGCCCGACAGCGGTGAGCAGGCTCTCGAGATCGCCGACATGCTGATCCGCTCCGGCGCC 55 Query 66048 CTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTC 66101 || |||| ||||| | ||||| || ||||| || ||||| ||||||||| || Sbjct 54 CTCGACATCATCGTCATCGACTCCGTCGCGGCGCTCGTGCCCCGCGCCGAGATC 1 >seq86170 Length=626 Score = 114 bits (126), Expect = 6e-21 Identities = 172/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 66351 GTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAAC 66410 ||||||||||||||||| || |||||||||||||||||||| ||||||||| | | Sbjct 601 GTCGGCAACCGCACCCGCGTCAAGGTCGTCAAGAACAAGCTCGCCCCGCCGTTCAAGCAG 542 Query 66411 GCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTG 66470 ||||||||| | || ||||||| |||||||| || |||| | || ||||| | Sbjct 541 GCCGAGTTCGACATCATGTACGGCCAGGGCATCAGCCGCGAGGGCAGCCTGATCGAC--G 484 Query 66471 GCCGTGTCG-CA-GGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGA 66528 | | |||| || || ||||| ||| | |||||||||| || ||||| | | | Sbjct 483 TCGGCGTCGACATCGGTCTGGTCCGCAAGGCCGGCGCCTGGTACACGTACGACGGCGACC 424 Query 66529 ACGTCGCCCAGGGCAAGCCCAAGGCCGTCCAGTGGCTCAAGGCCAACCCGGACATCACCG 66588 | | | ||||||||| ||| | |||| ||||||| |||||| ||| | ||| Sbjct 423 AGCTGGGTCAGGGCAAGGAGAAGTCGCGGCAGTTCCTCAAGGACAACCCCGACCTGGCCG 364 Query 66589 A 66589 | Sbjct 363 A 363 >seq59516 Length=1985 Score = 95.1 bits (104), Expect = 6e-15 Identities = 215/314 (68%), Gaps = 17/314 (5%) Strand=Plus/Minus Query 59142 TCGTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCAC-CCAAGGTGGGCAGGCCGTC 59200 || |||||| |||||||| |||||| ||||| |||||| || | | || | | || Sbjct 1271 TCATCGGCAACCTGACCGACGACCCGGAGCTCAAGTTCACTCCTTCGGGCGCCG-CAGTT 1213 Query 59201 GCCAACTTCACCGTCGTGTCCAA----CGAACGCCGCCGCGACGCCCAGGGCAAC---TG 59253 |||||||||||||||| ||| | ||||| || ||| ||| |||| || Sbjct 1212 GCCAACTTCACCGTCGCGTCGACGCCTCGAAC----CCTCGATCGTCAGACCAACGAGTG 1157 Query 59254 GGTCGACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGT 59313 | |||||||| || ||| | |||||| || ||||||| | |||||||||||| Sbjct 1156 GAAGGACGGCGAGGCTCTGTTCATTCGCTGCGCCGCCTGGCGCCAGCTCGCCGAGAACGT 1097 Query 59314 AGCGGAAAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCA-GCGCT 59372 || || || ||||| || |||| |||||||| || ||| || |||| ||| Sbjct 1096 CGCCGAGTCGCTGCAGAAGGGTCAGCAGGTCATCGTCCAGGGCCCGCT-GAGCATCCGCA 1038 Query 59373 CCTTCGAGACCAAGGAAGGCGACAAGC-GCACCGTCATCGAGGTGGAGGTAGACGAGATC 59431 || |||| |||| || | || |||| | ||||| || ||| |||||||| Sbjct 1037 ACTACGAGCGTCAGGACGG-ATCGCGCGGCACGAGCGTCGAGATGACGGTCAACGAGATC 979 Query 59432 GGCCCGTCGCTGCG 59445 || ||||||||||| Sbjct 978 GGTCCGTCGCTGCG 965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242157925873655