Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1123 96.9 2e-15 seq979 89.7 4e-13 seq10374 87.8 1e-12 seq630 84.2 2e-11 >seq1123 Length=183110 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/215 (71%), Gaps = 12/215 (6%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||| || ||||| ||||| ||| ||| |||| || ||||| | Sbjct 67885 ATGCAAATTTTTGTGAAGACCCTTACAGGGAAGACTATAACACTTGAGGTGGAAAGTTCT 67944 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || |||| ||||| |||||| |||||||| || |||| ||| | Sbjct 67945 GACACTATTGACAA--CGTCAAGGCAAAAATCCAGGACAAAGAGGGCATTCCTCCGGACC 68002 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG----CTTGTCCGAT 27963 |||| | || |||||||| || ||||| | || || | |||| |||| | ||| Sbjct 68003 AGCAGAGATTGATTTTTGCTGGCAAACAGCTAGAAGATG---GCAGAACACTTG-CGGAT 68058 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||| ||||| || |||||||| | || ||||| Sbjct 68059 TACAATATCCAGAAGGAGAGCACCCTTCACTTGGT 68093 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/215 (70%), Gaps = 12/215 (6%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| |||||||||||||||||| ||||| |||| || || ||| | Sbjct 67657 ATGCAAATCTTTGTCAAAACTCTTACTGGGAAAACCATTACCCTTGAGGTTGAGAGCTCT 67716 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | ||||| ||||| ||||| || || || || || || |||| ||| | Sbjct 67717 GACACGATTGACAAT--GTCAAGGCCAAGATCCAAGATAAGGAGGGAATTCCCCCGGATC 67774 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG----CTTGTCCGAT 27963 | || | || |||||||| || || || | || || | |||| |||| | ||| Sbjct 67775 AACAGAGATTGATTTTTGCTGGCAAGCAGCTTGAAGATG---GCAGAACCCTTG-CAGAT 67830 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||||||| || || |||||||| | |||||||| Sbjct 67831 TACAACATTCAGAAGGAGAGCACCCTTCATTTGGT 67865 >seq979 Length=283929 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| || || || ||||| || || || |||| ||||| ||| | Sbjct 158109 AATGCAAATCTTTGTTAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAGAGCTC 158168 Query 27849 CGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| | | |||| || ||| || || |||||||||||| |||| || Sbjct 158169 CGACACTATTGACAAC--GTTAAAGCCAAGATCCAGGACAAAGAAGGTATTCCCCCAGAC 158226 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| | || |||||||| || || || |||| || | || | | | |||||| Sbjct 158227 CAGCAAAGATTGATTTTTGCGGGCAAGCAGCTGGAGGATGGCCGGACTCTAGCAGATTAC 158286 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||| || || ||||||||| | || ||||| Sbjct 158287 AACATTCAGAAGGAGAGCACTCTTCACTTGGT 158318 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || ||| | |||||||| || || | || || |||||| | Sbjct 158794 ATGCAAATATTTGTCAAGACTTTGACTGGGAAGACCATCACTTTGGAGGTTGAAAGCTCG 158853 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || |||| || || || || |||||||||||| |||| || | Sbjct 158854 GATACTATTGACAAC--GTGAAGGCCAAGATTCAGGACAAAGAAGGTATTCCACCAGACC 158911 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| ||||| || |||||||| || || ||||| |||| | | | | || | || |||| Sbjct 158912 AGCAGCGGTTGATCTTTGCCGGGAAGCAGTTGGAGGACGGAAGGACCCTGGCGGACTACA 158971 Query 27968 ACATCCAAAAAGAG 27981 ||||||| |||||| Sbjct 158972 ACATCCAGAAAGAG 158985 >seq10374 Length=62593 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| || ||||| || || || | || ||||| ||| | Sbjct 58090 ATGCAAATCTTTGTTAAAACCCTGACTGGCAAGACCATAACTCTCGAGGTCGAGAGCTCT 58149 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| |||||| || || |||||||| ||| |||| || | Sbjct 58150 GACACCATTGACAAC--GTCAAAGCCAAGATCCAGGACAAAGAGGGTATTCCTCCAGACC 58207 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | || |||||||| || || || |||| || | || | | | ||||||| Sbjct 58208 AGCAAAGATTGATTTTTGCAGGCAAGCAGCTGGAGGATGGCCGTACTCTAGCAGATTACA 58267 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||| || || ||||||||| |||| ||||| Sbjct 58268 ACATTCAGAAGGAGAGCACTCTGCACTTGGT 58298 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||| | ||||| || ||| || | || || || || | Sbjct 59002 ATGCAAATTTTTGTTAAGACTTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGTTCT 59061 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || || || |||||||| ||| |||| || | Sbjct 59062 GACACCATTGACAAT--GTGAAGGCTAAGATTCAGGACAAAGAGGGTATTCCACCAGACC 59119 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || || || ||||| || ||||||||||| |||| | | | | || |||| |||| Sbjct 59120 AGCAGCGATTGATCTTTGCTGGGAAACAATTGGAGGACGGAAGGACCCTGGCCGACTACA 59179 Query 27968 ACATCCAAAAAGAG 27981 |||||||||| ||| Sbjct 59180 ACATCCAAAAGGAG 59193 >seq630 Length=274473 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/234 (68%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || || |||||||| || || |||||| || || | || || ||| | Sbjct 10948 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAAACCATAACCCTGGAGGTGGAATCC 11007 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 |||| |||| |||| |||||| || || ||||| || || | ||| || Sbjct 11008 TCCGATACGATCGACAAC--GTCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGG 11065 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| | || || ||||| || || | || |||| ||| | | | |||| | Sbjct 11066 ACCAGCAACGTCTTATCTTCGCCGGGAAGCAGCTAGAGGACGGACGTACCCTCGCCGACT 11125 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 |||||||||| || ||| ||| | ||| | || | ||| | |||||||||| Sbjct 11126 ACAACATCCAGAAGGAGTCCACCCTACATCTCGTACTCCGTCTCCGTGGCGGCG 11179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355474166910405