Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq689 120 3e-22 seq7954 105 6e-18 seq6805 104 2e-17 seq1123 104 2e-17 seq979 102 7e-17 seq10374 100 2e-16 seq4136 98.7 9e-16 seq77571 86.0 5e-12 >seq689 Length=155235 Score = 120 bits (132), Expect = 3e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || ||||| || ||||| ||||| || |||| ||||||||||| || |||||| Sbjct 95878 TCCTTCTGGATATTGTAGTCGGCGAGTGTACGACCGTCTTCAAGCTGTTTCCCGGCAAAT 95937 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || |||||||||||||| | || | || ||| |||||| ||| || ||||| | Sbjct 95938 ATTAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTAGCTTTGACATTG 95997 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | || ||| || ||||| |||| || || |||| ||||| || ||||| || Sbjct 95998 TCAATGGTGTCGGAGGATTCCACCTCCAGGGTTATGGTTTTCCCCGTGAGGGTTTTCACG 96057 Query 39274 AAGATTTGCATCTT 39287 ||||| |||||||| Sbjct 96058 AAGATCTGCATCTT 96071 >seq7954 Length=38498 Score = 105 bits (116), Expect = 6e-18 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || | ||| || ||||| ||||| ||||| || ||||||||| | || || Sbjct 10148 ACCAAGTGCAATGTGGATTCCTTTTGGATATTGTAATCAGCCAGTGTTCGTCCATCTTCG 10207 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || ||||| || || | ||| ||||| |||||| | || ||| |||||| | Sbjct 10208 AGCTGTTTTCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGG-ATGCCCTCCTTGTCC-T 10265 Query 39195 GATTTTCTGTTTGAGCGTCGCCACC-GTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || | | || || | | | || || ||| |||||| |||| ||||| ||| Sbjct 10266 GAATCTTTGCTTTCACATTGTCAATTGTGTCGGAACTCTCCACCTCCAAAGTGATGGTTT 10325 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| || || || ||||||||||| Sbjct 10326 TTCCGGTCAGGGTCTTCACGAAGATTTGCAT 10356 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || ||||| || |||||||| || ||||| || | || || ||||| || || ||||| Sbjct 10622 TCCTTTTGGATGTTATAATCCGCCAGTGTGCGACCATCCTCTAGCTGCTTACCGGCAAAG 10681 Query 39154 ATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || | ||| || ||||| |||||| || || |||||| ||| ||| || | | Sbjct 10682 ATCAAACGTTGTTGGTCTGGTGGGATTCCT-TCCTTGTCCTGGATCTTCGCCTTAACATT 10740 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | || ||| |||||| |||| ||||| ||||||| ||||| || || || Sbjct 10741 ATCGATTGTGTCGGAGCTCTCCACCTCCAAAGTGATGGTTTTTCCGGTCAGGGTCTTCAC 10800 Query 39273 AAAGATTTGCAT 39284 ||||||||||| Sbjct 10801 GAAGATTTGCAT 10812 >seq6805 Length=45365 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| || || || || || ||||| || || ||| |||| || ||||| Sbjct 31764 ATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCTAGCTG 31705 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || || || || || ||||||||||| | || | | ||| |||||| ||| || Sbjct 31704 CTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTT 31645 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 ||||| | | || |||||| |||||||| |||| || || |||| ||||| Sbjct 31644 GGCTTTGACATTGTCGACGGTATCGGAGGACTCCACCTCCAGGGTAATGGTTTTCCCCGT 31585 Query 39261 CAGCGTTTTAACAAAGATTTGCATC 39285 || ||||| || ||||| |||||| Sbjct 31584 TAGGGTTTTCACGAAGATCTGCATC 31560 >seq1123 Length=183110 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 39072 TAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTC 39131 || |||||| || || |||||||| || || ||||| ||||| |||||||||| | || Sbjct 68097 TAGCACCAAGTGAAGGGTGCTCTCCTTCTGGATATTGTAATCCGCAAGTGTTCTGCCATC 68038 Query 39132 ATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTC 39191 || ||||||||||| ||||| || | | ||||||||| | || | || ||||||||| Sbjct 68037 TTCTAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCCGGAGGAATGCCCTCTTTGTC 67978 Query 39192 CATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATAC 39250 | |||||| |||| ||| | | | || || ||||| || | || ||| Sbjct 67977 CTGGATTTTTGCCTTGA-CGTTGTCAATAGTGTCAGAACTTTCCACCTCAAGTGTTATAG 67919 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || || ||||| |||||||| Sbjct 67918 TCTTCCCTGTAAGGGTCTTCACAAAAATTTGCAT 67885 Score = 93.3 bits (102), Expect = 4e-14 Identities = 170/247 (69%), Gaps = 8/247 (3%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || |||||| | || | || ||||||||| || |||||||| || | Sbjct 67898 ACAAAAATTTG--CATGCCTCCGCGTAGCCTTAGCACCAAATGAAGGGTGCTCTCCTTCT 67841 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || || ||||| ||||| |||| | || |||||||| ||||| ||||| || | | Sbjct 67840 GAATGTTGTAATCTGCAAGGGTTCTGCCATCTTCAAGCTGCTTGCCAGCAAAAATCAATC 67781 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 ||| || || | ||| | | ||| || || ||| || |||| | | | || Sbjct 67780 TCTGTTGATCCGGGGGAATTCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCAATCG 67721 Query 39221 TATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGA 39277 | || |||| || || || | || || |||| || || || ||||| ||||||| Sbjct 67720 TGTCAGAGCTC---TCAACCTCAAGGGTAATGGTTTTCCCAGTAAGAGTTTTGACAAAGA 67664 Query 39278 TTTGCAT 39284 ||||||| Sbjct 67663 TTTGCAT 67657 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 ||||||||||| || || |||||| || || || ||||| || || || || | || Sbjct 68324 AACACCAAATGAAGAGTTGACTCTTTCTGAATGTTGTAATCAGCTAGGGTCCGGCCATCC 68265 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 |||||||| || || || || ||||| | |||||| || | ||| | || |||||||||| Sbjct 68264 TCAAGCTGCTTCCCAGCGAAAATAAGCCTCTGCTGATCAGGGGGAATGCCCTCTTTGTCC 68205 Query 39193 ATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGA---CTCCACGTCCACCGTGATA 39249 ||| || |||| | | | ||||| ||| ||||| || | || ||| Sbjct 68204 TGGATCTTAGCCTTGACGTTATCAATAGTATC---CGAACTTTCCACCTCAAGTGTTATA 68148 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || || ||||| |||||||| Sbjct 68147 GTCTTGCCGGTAAGGGTCTTCACAAATATTTGCAT 68113 >seq979 Length=283929 Score = 102 bits (112), Expect = 7e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAA-CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||||| |||| || ||| |||||| || || |||||||| || || || || ||||| || Sbjct 158336 CCTCCCCTTA-GCCTAAGCACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCTGC 158278 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 || || || | || || ||||| ||||||||||| || | | |||||||| | ||| Sbjct 158277 TAGAGTCCGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAATCTTTGCTGGTCTGGGGG 158218 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCA 39235 | | ||||||||| ||| || | || | ||| | | | || ||| ||| | Sbjct 158217 AATACCTTCTTTGTCCTGGATCTT-GGCTTTAACGTTGTCAATAGTGTCGGAGCTCTCGA 158159 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || | ||||| | || || ||||| || ||||||||||||||||| Sbjct 158158 CCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTAACAAAGATTTGCAT 158110 >seq10374 Length=62593 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| ||||| | | |||||| || || |||||||| || || || || ||||| || Sbjct 58316 CCTCCCCTTAACCTGAGCACCAAGTGCAGAGTGCTCTCCTTCTGAATGTTGTAATCTGCT 58257 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| ||||| ||||| || | | |||||||| | || Sbjct 58256 AGAGTACGGCCATCCTCCAGCTGCTTGCCTGCAAAAATCAATCTTTGCTGGTCTGGAGGA 58197 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG-TATC---GCTCGACTC 39233 | | |||||||||| ||| || ||||| ||| | || | | || |||| || Sbjct 58196 ATACCCTCTTTGTCCTGGATCTTGGCTTTGA-CGTTGTCAATGGTGTCAGAGCTC---TC 58141 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | || || | || || ||||| |||||||||||||||||||| Sbjct 58140 GACCTCGAGAGTTATGGTCTTGCCAGTCAGGGTTTTAACAAAGATTTGCAT 58090 >seq4136 Length=93312 Score = 98.7 bits (108), Expect = 9e-16 Identities = 133/178 (75%), Gaps = 13/178 (7%) Strand=Plus/Plus Query 39030 CAGTATGCGT---AACTAAAATTT--ATTCAAGCCTCCTCTTAAGCGTAA-CACCAAATG 39083 ||||| |||| ||| ||||||| |||| | || ||| ||| | | |||||| || Sbjct 34909 CAGTAAGCGTCTTAACAAAAATTTGCATTCCACCC--CTC---AGCCTGAGCACCAAGTG 34963 Query 39084 TAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTT 39143 || |||||||| || || || || ||||||||||| || || | || ||||||||||| Sbjct 34964 GAGTGTGCTCTCCTTCTGGATGTTGTAATCGGCAAGGGTGCGGCCATCCTCAAGCTGTTT 35023 Query 39144 GCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||| ||||| || || | ||| ||||| |||||| | || ||| ||||| |||||| Sbjct 35024 GCCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGG-ATGCCCTCCTTGTCTTGGATTTT 35080 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 |||||||| || || ||| ||| ||||| |||||||| || || | || || | || Sbjct 34725 AACACCAAGTGGAGAGTGGACTCCTTTTGAATATTATAGTCAGCCAAAGTACGGCCATCC 34784 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTC 39191 ||||||||||| || || || ||||| | ||| ||||| |||||| | || ||| ||||| Sbjct 34785 TCAAGCTGTTTACCAGCGAAGATAAGCCTCTGTTGGTCTGGTGGG-ATGCCCTCCTTGTC 34843 Query 39192 CATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACT 39251 |||||| || | | | | || ||| || || || | || ||| | Sbjct 34844 TTGGATTTTAGCCTTAACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTAATAGT 34903 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || || ||||| |||||||| |||||||| Sbjct 34904 TTTCCCAGTAAGCGTCTTAACAAAAATTTGCAT 34936 >seq77571 Length=523 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || |||||||| ||||| ||||| || |||| ||||||||| Sbjct 340 TGGAGAGTGGACTCCTTCTGGATATTATAGTCGGCTAGTGTACGACCGTCTTCAAGCTGT 399 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTC 39191 || || || ||||| ||||||| |||||| | || | || ||| ||||| Sbjct 400 TTCCCGGCGAATATTAGACGCTACTGGTCCGGCGGGATGCCCTCCTTGTC 449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429076981187195